RNA id: XM_026935870.2


Basic Information

Item Value
RNA id XM_026935870.2
length 2908
RNA type mRNA
GC content 0.52
exon number 13
gene id nfatc4
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26384917 ~ 26444378 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAAACGGGAATCCACCCAGAGACAattagaggagaaaaaaaaagcggATAAAAGTttggagtgtgtgaaagtgcagGCTGTGGATGCGGATGTGTGCagaattacaatttattttactttataaacaTGCAGATCCGCCGGCAGAAGAAGTTTTAATAGTGAATTTGAACTGAAGGAGGAACAAAAAGTCTGTTAGACGCGGAATAAAGAAAGATTTTGCGGATAAAAGCTTTAAGGAGGTTatgtaaaggaaataaaagtgcacgaggagatgagaagagaagaggagatgtGATGATGATCCTGACCAGAACATCCGGGAATTTTTTAGGAGTATAAACCTTTAATAAACTGTATTTCTAAGACATTAAAGTGGATTAAAGTTGATAAAAGTGCGGATTTGGAGTGAGGATGAGCTCTGGGTGGGAGGAAGGAGAGCTGGACTTCAAACTGATCTTCGAGGAGGAGCAACAACTTCAGGACAGCACGGTCTCCAACAACCAACTGACCTCCACACTCAGCCAGCCAATGGGAATCCTCCCTTCCCCTCCGCCATCCAATCACAGGGCTGGCATGCATTCCCCGCCCCCCAGACGAGCACTGGTGAGAGAGTTCAGTGGGACGTATGAGAGTCTCCCGGCCCGATCTGTCCAGgtCTCGGAGTCTCGTGTTTTGGAGTGTCCCAGTATTCAGATCACCACCATCTCCCCTGATGATGATTTTACCCCAGGAGGGGGAACTTACTGGGACAGAGACCGTCTCTACCTGCCCTTCCTTGACCCCTACTGTTACAGGGACAGCAGTATGGGGGCAGGGTCTCTGAGCCCGAGTCCGGCCTCCAGCCCATCTTCTCGTGGTTGGCTAAGTCCTGCGTCAAGCTGTGATTCTCTCCTGGTGGAAGACGAGGAGCTGAGCGAAGCCACCACCCATTTCTGTCTATCACCCTCATCCCGACCCACCTCACCTGGGGGCAAAAAACGGAGAAACTCCCCTCTTCCCTCGCCAAGCCACTCCCGCAGGGGCAGTTACTCCGAAGACCATGTCCAGTTCTTGGAAACGGGAGACTCCGCCCCCCAATCTCAGGGCCAGATTGAGCTCAGTATCCCTCAGAAGACCAGGAAGACCTCACTGGAGCAGGTCTCCTCCCGAGACGTGGAACTAGAGCAGGTTCCTGCTCCAAATACCCCCTGCCCCTCCTCAGAGCTGGGGCAACTCAGGAGGGAGCCTCCCACGCTGGGGATGGACTACCTCTCTGTACCAAACACCCTCGGCTGGGGAAGAACTCGTGCCAGTGCCCACAGCCCCATCTTCAGGTCTAATGCATTGCCACCGCTTGATTGGCCGTTGCCGTGTCAGTTTGATCAGTATGAGTTGCGGATCGACGTTCAGCCGCGTCCTCATCATCGCGCTCATTATGAGACAGAAGGAAGTCGAGGAGCCGTGAAGGCGTCACCAGGAGGACATCCTGTAGTGAAGCTGGTGGGATATGCAGAGCGTCAGCCACTTTCATTACAGGTTTTTGTAGGAACTGCAGACGACAGATCAATTCGCCCACATCCGTTTTATCAAATACATAGgGTGACAGGGAAGATGGTCGGCACAGCGAGTCAGGAGAGCATGCAGGCTGGAACCAAACTATTGGAGATCCCTTTAAACCCCGAGACCAACATGACAGCACTTATTGACTGTGCGGGGATCCTGAAGTTGAGGAACTCTGATATCGAGCTGAGGAAAGGAGAGACAGACGTTGGGCGGAAGAATACTCGTGTGCGATTGGTCTTCAGGACTCACCTGCCTTTAGCACCGCCCCTTGGTCCACCTGGACGAGTGTTAGCGCTGCAGGTGGCCTCTCAACCAATTGAGTGCTCCCAGCGCTCAGCTCAGGAGTTACCCATCATTGAGTCCATCAGCGTCACTTCTTGTTTGGTGGAGGGAGGACCGGAGCTTCTGGTCAATGGCAGCAACTTCCTGCCCACATCCAGAGTGTTGTTTATGGAGAGAGGTTCAGATGGTAAACTGCAGTGGGAGGAGGAGGCTCATGTGGACCGTGACAAAAGCACTGAGaatgtgTTGTGTGTACGCGTGCCAGCCTACagtgatatgtgtgtgagtcAGCCGGTATGTGCGTGCCTGTACGTGTCCAACGGAAAGCGCAAGAGGAGcagcacacactgctttaaatatctaccgaTGCTGTGTAAAGAGGAAGACCCTCTGTTGTCTCGCCCATCTCTCTTGCTGTTGGATGGAGGGATGCCATTGTGTCCACACCCTCACCCTCCTGAGTATTCTTACACTGCCCCTGTGGCATATCAAGATGAGTTCTGTCCCCCGCCTGAGACGTCGGAGGACAGGGGGCCGGTAAACGAGTGTGATCCCTCATTCCAGAGCCTGGAGCTGGGTTTCAGTGAGCTGCTCCCACCACTGTACCCACCCCAGCCATGGCCCGACTCTCCGTACCTGTCCTCATCCCCATCCCCGTCTCACTCCTCCTCCATCAGCCCATTCCCCAGCAGCCCTGTCTCCAcctcccccctcccccctccTCTCCTACCCCACGGCCCCCCTGCCTACCACCAGGAGTGTCACATGACCTTCAGTGGTGCCCCACCCATGCAGCATATCACGCTGGATGAAGTGACTGAGTTCATTGGTGAGGACATCAGGACGTTTCACACAGACAGCCGACCCGCGTAACATGCTGCTCTTGTTTACACGTagaagtttattttatacattctgttgtttttacgTTACAGTATATTTTGTGCTAATTCACAATAAGGGAACGGCTGTAAGTATGAGTTTTGTAGATAAGTGTTACGTTATCAGCATTGAGTTGATATCAAATGgagcaagtgttttttttaaacatgtttgctaaataaattatcgttgtattaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84608 lncRNA upstream 89935 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 158502 26225431 ~ 26226415 (+) True LOC117597184
TU84566 lncRNA upstream 158580 26224912 ~ 26226337 (+) False G71381
TU84695 lncRNA downstream 19633 26464011 ~ 26464314 (+) True G71482
TU84702 lncRNA downstream 28197 26472575 ~ 26551026 (+) True G71485
TU84751 lncRNA downstream 223384 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 340194 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 363679 26808057 ~ 26856605 (+) True G71557
XM_034303643.1 mRNA upstream 9091 26373975 ~ 26375826 (+) False LOC117597079
XM_034303638.1 mRNA upstream 46322 26327927 ~ 26338595 (+) False mettl17
XM_026936579.2 mRNA downstream 21393 26465771 ~ 26502494 (+) True myo9b
XM_026936584.2 mRNA downstream 21402 26465780 ~ 26502494 (+) False myo9b
XM_026936580.2 mRNA downstream 21402 26465780 ~ 26502494 (+) False myo9b
XM_026936582.2 mRNA downstream 21402 26465780 ~ 26499803 (+) False myo9b
XM_026936583.2 mRNA downstream 21402 26465780 ~ 26499434 (+) False myo9b
TU84616 other upstream 9138 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 20684 26353189 ~ 26364233 (+) False LOC117597079
XR_003404061.2 other upstream 92133 26288290 ~ 26292784 (+) True zgc:66427
XR_003404105.1 other downstream 219593 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 668770 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 1044875 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 1112139 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 1113387 27557765 ~ 27557902 (+) True LOC113540696

Expression Profile