RNA id: XM_034303637.1


Basic Information

Item Value
RNA id XM_034303637.1
length 1723
RNA type mRNA
GC content 0.48
exon number 13
gene id mettl17
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26327927 ~ 26338595 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTGTTTCCTGACGGATTTATTTTGATGCCGTACCTCAGTGAGAGAACGTGAATAGACGTGAAATTGTCTCTATCTGTAATTGTgctgtgtttatataaatattaagttAAATATCGAATAATTTATGAAGTAAATATTACACACGTGGAATAGACATGTCTTCTCTCTATAAGAGGTTATGTGAAGTTTGTTGGCGCAGAGCTGCTTTTCCTCTCACTCTAACCCAGCGGtgtaagACTGCTGCAGTGCCGTTTGTCCAGCCCGAGTTTCTGAGAGCATCTCCACACCATAACCACCCGGGAGTGACCAACATGAAAACCGTTAGACTTCCCAGGGAACTGCAGAGTGGGGCACTGTCTGTCATCTACaAATCAGAGGTGAAGGATCTGTCAGAGAGAGCGTGCAAGCTGACTAACTTCTTGTGGAGCAGGAAGCGAGCGGTGGAGAGCCatgagctgagagagagagccatCGCTCTGGAGAAGAAGtggaaggagaaggaggaggagcgaCTGAgtgatgaAAACCATGTCTCCTTTGAAAATCGAATCAGGAAGAAAGTTTTATCTGAGCTGAAGAGGACAACATACCACTGGACACCTTTAAAGTATGATGCTGATCTCGGTGTGGTGTACATGGCTGCCAGATTAGCAGGTGGCTACGCTGCAGTGATGAGGGCTCTTaatgagATAAAGAAGATAGACTCTTCCTTCACTCCTCATTCACTGCTGGACTTTGGCTCTGGACTCGGCACGGCTCTGTGggccgcacacacacactggggcGACTCTCTGAGGGAGTATGTGTGTGTCGACACCTCTGCAGCCATGAACAGTCTGGCCGAGAGACTTCTCACAgAGTTACCCACTCAGGAAGTGCGAGAGGAGACACTGCTCAcactgtggaggaaaacacactCCTACCTGGTTTTAGTGGAAAACGGAACAAAAGAAGGACATGAGATCCTCATGGAGGCCAAAGACATCTTACTTAAGaGGGAAGAAAAAGTGAGTTGTGATGTTCGGAGGCCGGTGGTGTTCGCTCCGtgtACTCATCAGCTGCCATGTCCCAAATTACTGAAGCAGCCAGTCACACCCTGCAACTTCCTGCAGCCCTACTACCCACTTCCTGTGGCCGGGAACAGCGAGCCTGTGCAGGAGAAGTTCAGTTTCCTGGTCGTGTCCCGATCAGAGCTGCAGAATTCCGAGGCAGTGCAGTGGAGCAGATTAATTTCTCCCATCCACAGACGACCGAGACACGTGCAGTGTCAGATCTGCTGCTCGAACGGGGAACTCAAACAGCTCGCCATTACCGCAAGGCATCATGGGAGAGACACGTACCGCTGCGCTCGGAGGAGTGACTGGGGGGACCGACTGCCGATCATCCACACGGAGAAACACTTGTCCACTTTCTCTCAGTTCTGCTGAAAAACTCATGAGAACCCATCAGACAGTTCTATTTGTTCCTAATGGTTTTCTGATGGTCTGTGGTGGTAGTGATGGAAGGCACTAGTGGTATTTAACAGGAACCAGTTAATCCCTAATGGATAAAGTTAAGACATAGGCCATTATGTGATGGAACCCATTAGAGATTTTCACACTGGGTTGTAATTTTCTGAAGTACATTGAGTCGATATTCATGATTTACCCCGAATGCTTTGCTGCACATGGTGGATGAAGTTGTTTATAAACATTGGCAATAAAACCCTtcatatttcagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84608 lncRNA upstream 33719 26294755 ~ 26294982 (+) True G71408
XR_004578087.1 lncRNA upstream 102286 26225431 ~ 26226415 (+) True LOC117597184
TU84566 lncRNA upstream 102364 26224912 ~ 26226337 (+) False G71381
TU84695 lncRNA downstream 125416 26464011 ~ 26464314 (+) True G71482
TU84702 lncRNA downstream 133980 26472575 ~ 26551026 (+) True G71485
TU84751 lncRNA downstream 329167 26667762 ~ 26668128 (+) True G71519
TU84789 lncRNA downstream 445977 26784572 ~ 26786560 (+) True G71550
TU84796 lncRNA downstream 469462 26808057 ~ 26856605 (+) True G71557
XM_026935880.2 mRNA upstream 9823 26314343 ~ 26318878 (+) True si:ch211-284o19.8
XM_026937232.2 mRNA upstream 35917 26288293 ~ 26292784 (+) False zgc:66427
XM_034303850.1 mRNA upstream 104663 26216064 ~ 26224038 (+) True LOC117597118
XM_034303956.1 mRNA upstream 204555 26073043 ~ 26124146 (+) False rasal2
XM_034303952.1 mRNA upstream 206135 26056924 ~ 26122566 (+) False rasal2
XM_034303643.1 mRNA downstream 35380 26373975 ~ 26375826 (+) False LOC117597079
XM_026935870.2 mRNA downstream 46322 26384917 ~ 26444378 (+) True nfatc4
XM_026936579.2 mRNA downstream 127176 26465771 ~ 26502494 (+) True myo9b
XM_026936584.2 mRNA downstream 127185 26465780 ~ 26502494 (+) False myo9b
XM_026936580.2 mRNA downstream 127185 26465780 ~ 26502494 (+) False myo9b
XR_003404061.2 other upstream 35917 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other upstream 35917 26288290 ~ 26292784 (+) False zgc:66427
XR_004578101.1 other upstream 35917 26288292 ~ 26292784 (+) False zgc:66427
XR_003404060.2 other upstream 35917 26288294 ~ 26292784 (+) False zgc:66427
TU84572 other upstream 99510 26228764 ~ 26229191 (+) True G71385
TU84616 other downstream 14594 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other downstream 14594 26353189 ~ 26364233 (+) False LOC117597079
XR_003404105.1 other downstream 325376 26663971 ~ 26664082 (+) True LOC113540735
XR_003404108.2 other downstream 774553 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 1150658 27489253 ~ 27489325 (+) True trnat-ugu_5

Expression Profile