RNA id: XM_026935883.2


Basic Information

Item Value
RNA id XM_026935883.2
length 2807
RNA type mRNA
GC content 0.41
exon number 2
gene id si:dkeyp-66d1.7
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26446458 ~ 26452831 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGGAGTGTGTGGAGGTTGttcgttttctctctctctcacactgtaaACTCCCATCACTGAACTCACACTGAATAAGACACACTCTCTTACACAAAGCACTTTTACAGATACACAGTCTGAGCTCAGAGACTCCACGAGACAAGGAGAAGATCAGAGCAGACATCCTTCTTCGCAACAACCCAGCAGCACAGATCAGGCGTGTCTGAGGCGTTCCCATCATGCCAGTGGTGTTCCGCTCCTCCCCGCTGATGTGGTCGCGGGTGGCGGCCATGGTGTTTGCGTGTGTGGCATTTAGCGTAGCTTTGTATGGCGCACAGGTGAAGCATGGTACCGGAGACTGGTGCGTGTTCTGTTGGAGCTTCAGCTTTGCCGGGACGCTACTGATCCTCCTGGTGGAGATCTGCGGCCTACAGTCTCGTGCTCCTGTCTCCTGGAAGAACTTCCCCATTACCTTCGCCTGCTATGCCTCTctactctgtctgtctgcttccATCATCTTCCCTTTATTCTTTCTGAAAGGCTATGGGGGACGTGAGGAATACGTCAACTGCCGCATCGTCTCCACTGTCTTCTCCTGCCTTGCTACACTCGCCTACTTCAGCGAGGTCAGCTTGAGCAAGGCGCGCCCAGGCGAGGTGTCCGGCTACATGGCTACAGCGCCAGGTATTCTGAAAGTCTGTGAGACCTTCATCGCCTGTGTCATCTTCGTTTTCATCAGCGATCCGGTGTCTTATAACCAGAACGCAGCAACAAAATGGTGTCTCTCTGTCTACTGCATCTGCTTCATCCTGTCAGCGGCCATCATCATTATGTGCATCGCTGAGTGGACTGGACTGCTCCCAGTTTCCTTCCCACGTTTCCTGTCCATCTACGCTCTGCTCGCCGTAGCGATGTATCTCTCCGCCACCATCATCTGGCCCATTTACAAGTTTGATGATAAACATGGAGGGAACAGCCACCGGCCGAATGAGTGTGGCTCCTACCAGGGGCTCTGTCCATGGGATAAGACTTTAGCCATTGCTGTCCTCACTGCGCTAAACTTCCTGCTGTATCTTGCAGACCTGATCTACTCAGCCAGGCTAGTCTTCGTTACGGTTTAATCACAGTATTGCATTGCATTGTTTTCCAATACTCTTTCTTCTCAGCCACCATCTTAAATTACTGTTATTAGCTTGAACGATGTGCGTTAGATTAGCATACTCCGACATCACTGTAGTCTCCATGTTTCTTTTCTAAAGCTGTTTAGTAAGGAGCGataaaattctttaaattaaaattgtggTTATCAAGCAGGCTAAGCAGACAACCAGGTAATTTGTACACTCACTAGTTAGCAAGCCAGATTATTCTAGCTAGGTAACACATCAGACTAGTTAGTTAAAAAGCCGATACAACTGTGCATGAAGTGTGAAGATTTCCTCACTTGCACAGTGTTTAGTGGAAGTCTGTGAACGTGGTGTTGGACACAGTATTGGAAAGTGGGCATGGTTGCATGATCAGTGTGGTGTCTGTGGTGTTCCGATGGCTACAATGATGCCACATATGCTAgtctctctttcagtctgttttttccattcaccacaaacaccacagatgacatcacatgaccttagacacactgaagtgtttatttttcagtattaatttgggaagctttattttttagtgttatgtggtttttttcctcattttcagcAATTGTACTATACCAAAGACCTTTGCACATCAGagtaatttttaaagaaaatttcacaaatcatttaaaattacaattttttaaagtttatcatcatactttttttttttacacttacagCTTAgttagttttaataataatatattagcaCATTTATCTCTCTGAACATTGATGCTTTGTCACATTAGAAGGGATTAGCGCATTGATTGAATCAGTGTTTTGGTAATTGTTATGAAGCAGCATGTAGTGCTGGTGCTTATGGATTAGTGCAGAAATGTTTTCACGTTTCACCATCAAGTGTTTAAACACAACTCCTGATAAAACCAGGTGAAGAATTACGTGTATATTCTGATTTATCATGATTTTTACACAGTGTGTTCGAGCTAGAGGATGCTAACTGCAAGCTAAATAAATTAGCATGTCAGACTTAAGACATTAAAAAAGATACAGTTTAAGAACTACTACTCCTATAATGATTCCAGAAATAACGTTGAAGTTATCGTTTAATTTCCATTTTGTCAAATTCATAGTCACtgatttaacaaagaataaaaaataattaaaaaaaactttgtattaaCCACTTCAGGGATTTGAGGCCATTTTCCAAAAACTGAAAATAGTCATGTGATTAAATTCTGGTCATGTAATTGGTCAGAAGAACTGCTAATGCTGTTAGCTAAATGTGCAGTTATCTCAATCTGTATGTTTTTAGCTCAACTTTCAGATGAAATTTGTATATTCTGACATAATTTCACAGGTTTAAATTTAGCATGTTAGCTAAATGacttaaaatacaaatttaaagaCAATAATGAAAAATTGATATATTGTGATTGTGACAGTAttatttttcaatgtttttcAATATATTCTGCTTTTGAAATAAACACGATCGTATCAGTATTACAGTAGGtgtatgcaaattatatatGCTAATTATATGCAAATGTGTTTCGTATGTAAATATCAGCTGTTAGTTACACACGAGTGTGTTTGTTGTGCAGAGTGAGTGTCTGTCACGGGCTGTTACAGTGAGGTTATCACTCTCACactggtgcattgtgggaaatgagctctgaataaaaaagaaagaaaaaaaaaagaaa

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84686 lncRNA downstream 19084 26426258 ~ 26427374 (-) True G71474
TU84680 lncRNA downstream 30706 26407975 ~ 26415752 (-) True G71470
TU84681 lncRNA downstream 31964 26409175 ~ 26414494 (-) True G71471
TU84679 lncRNA downstream 34110 26402539 ~ 26412348 (-) True G71469
TU84665 lncRNA downstream 63936 26368686 ~ 26382522 (-) True G71456
TU84840 lncRNA upstream 11199 26464030 ~ 26464318 (-) True G71589
XR_004577960.1 lncRNA upstream 44202 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA upstream 44202 26497033 ~ 26499267 (-) True LOC113540239
TU84851 lncRNA upstream 97263 26550094 ~ 26551030 (-) True G71596
TU84896 lncRNA upstream 105398 26558229 ~ 26559138 (-) True G71636
XM_034303639.1 mRNA downstream 70050 26371921 ~ 26376408 (-) True ltb4r2b
XM_026935881.2 mRNA downstream 78483 26338735 ~ 26367975 (-) True sdr39u1
XM_034303641.1 mRNA downstream 78509 26338735 ~ 26367949 (-) False sdr39u1
XM_034303640.1 mRNA downstream 79331 26338735 ~ 26367127 (-) False sdr39u1
XM_034303642.1 mRNA downstream 80122 26338735 ~ 26366336 (-) False sdr39u1
XM_026935989.2 mRNA upstream 125963 26578794 ~ 26595990 (-) False sppl2
XM_026935988.2 mRNA upstream 125964 26578795 ~ 26595990 (-) True sppl2
XM_026936649.2 mRNA upstream 219916 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 255251 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 317751 26770582 ~ 26786518 (-) True copa
TU84653 other downstream 70370 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2141532 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2409604 24036718 ~ 24036854 (-) True LOC113540746
LOC117597117 other downstream 2914442 23531238 ~ 23532016 (-) True LOC117597117
LOC113540013 other downstream 2928788 23516930 ~ 23517670 (-) True LOC113540013
TU84853 other upstream 19249 26472080 ~ 26551030 (-) False G71596
TU84852 other upstream 84271 26537102 ~ 26551030 (-) False G71596
TU85159 other upstream 643771 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 750952 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 942526 27395357 ~ 27395429 (-) True trnat-ugu_3

Expression Profile