RNA id: XM_026935888.2



Basic Information


Item Value
RNA id XM_026935888.2
length 1930
RNA type mRNA
GC content 0.49
exon number 3
gene id klf17
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24476189 ~ 24478804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CGCGCGCACGGGAGGCACTCGCACCTTCAGCTCAGAGGTGTCTACTCCTGCTCACTTTGCCTGATGAGAAAGTAAACTTGGTGAATTCTTTAGGTTGTTTGTAAAGGATGGCTCTGGCGGATGCGCTTCTGCCGTCCATTGCTGGCTTTTCCAGCACTCAGGTTTTGGATGAAAAACATGCTGAAATCCTACGAgAATGGTCCACTGATCAGACTGAGATCGGGACAAAACCCCGCGTCGAGGTTGAATTCAGCATTGTAGAGTCCCCGCCACTGACCAAGGACGAGGACGAGTTGTCCAGGTTTCTGGATCTCGAGTTTATTCTGTCTAACTCGATGGCATCACAGAATGAGGGTCCCTCCGTCACCCCTGCGTATCCGCTCCCGGAATCACCggagagctgcagcactgcgTACGACGGCGCCGATTCTGCGCACGGCCTTGTAGCCGAGCTTCTAAGCCCAGACATGGGCTACCGACCCGACACGACTCAAGACTACAACCCGAAAGGACATTTTGATACACCGGAATACACTGATTTGAGCATGCTGGACACCAGAAGTCACGTGCACTTGCACCTCGCCACTCCACACGCGTCGGCTTACAAAATAAAGACCGAGCGTCGCGAGCAGCCGTGCATGATGGCCACTGAGTACCTGGGACACTTTTATGGACAGAAGGTTCACGGTGTTGCTCCCGTGCAGCCGTTCGTCCAGCATGTGCACGACGCGTCCCGGGAGGTGAACGCGCACGTggcgcagcagcagcagcactatGCGTACCCACCGCAATATCACGGCGCGCAGCACTACCATGGACAGTACGCCGTTTTCACGGATCCCATGCGGGCCCATCACCCGGCTATGCCCGGCGCAGTGCTCACGCCACCGTCGTCACCGTTGCTCGAGCTCTACGGCACGGAGGAGAACAGACCGAAGCGGGGACGGCGCGCATGGGCTCGGAGACGCGCCGCCACGCACAGCTGCGAGTTTGCGGGCTGCGGGAAAACCTACACAAAGAGCTCGCACCTGAAGGCGCACATGCGGACACACACTGGTGAGAAGCCGTACCACTGTACCTGGGAGGGATGCGGCTGGAAGTTCGCCCGCTCCGACGAGCTGACCCGCCACTACAGgaaacacacaggacacagaCCCTTCCAGTGCCACCTCTGTGAGAGGGCATTCTCCCGCTCCGACCACCTAGCCCTGCACATGAAGAGACACATGTGAAAACATGCCTTATTTTAAAGGACATTTTTATTAGAGTTAAAGAAGTGGTCCAAGgagaaaaaactattttatacatattttccCTTTACCTCACTTCAATATTGAactagttttgcactggagctcctTAGCTGATGTACCTAAAACAATAATGGAAGCTCATGACCACTAATTAGTCTCACCAAAACATATGTAAATTAGTTTTTTCTTCATGAACTACTCCTTTAAGGCTATGCCTGTGTTTGGACAGCAGGGTTGTAAATATGACGAGGATTGTGTCAACTTTAAATTATAGCAGTATTTAAGAAGAAGAGagttttgttgaaaaaaaaaataagttatttAGTGCAAACATCGAAGACAGCTTTGTAAAGAAACAGGGCAGGACccatatttttgtatatattgcTTTTTGTCTTCATGCTTTCAGGCTGAGACAGGGGAATTTGGCATTTGGGGTTTTTAGTAGAGTTCAGGATCTTCTTATGCCCCTTTTTGTACAATGAGTTGTTAGAACTgttcataaatattcagtatGAACTCAAGGACTTTCAAAGCAGGTActcaagcagtttttttttatccaagtGATATGTTTGTGCAAATATTTTAAACCTTTGTATACTACATACTTGAATATGgtgttttttatgtatataaccactgacaaagttttaaaatacaaaaagttgAACTCA

Function


GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0048785 hatching gland development biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0035188 hatching biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU83047 lncRNA upstream 337301 24138635 ~ 24138888 (+) True G69987
TU83005 lncRNA upstream 369966 24028106 ~ 24106223 (+) False klhl18
TU83023 lncRNA upstream 391971 24083606 ~ 24084218 (+) True G69966
TU82994 lncRNA upstream 466329 24008464 ~ 24009860 (+) False G69946
TU82993 lncRNA upstream 467526 24007703 ~ 24008663 (+) True G69946
TU83213 lncRNA downstream 87441 24566245 ~ 24566613 (+) True G70129
TU83214 lncRNA downstream 88196 24567000 ~ 24567318 (+) True G70130
TU83218 lncRNA downstream 91844 24570648 ~ 24570850 (+) True G70134
TU83222 lncRNA downstream 95532 24574336 ~ 24574570 (+) True G70138
TU83223 lncRNA downstream 104372 24583176 ~ 24583376 (+) True G70139
XM_026936902.2 mRNA upstream 66892 24388273 ~ 24409297 (+) False rnf220a
XM_026936895.2 mRNA upstream 67015 24294636 ~ 24409174 (+) True rnf220a
XM_026936896.2 mRNA upstream 67015 24294636 ~ 24409174 (+) False rnf220a
XM_026936897.2 mRNA upstream 67015 24294636 ~ 24409174 (+) False rnf220a
XM_026936898.2 mRNA upstream 67015 24294636 ~ 24409174 (+) False rnf220a
XM_026936540.2 mRNA downstream 28401 24507205 ~ 24561278 (+) True slc6a9
XM_034303740.1 mRNA downstream 30543 24509347 ~ 24561278 (+) False slc6a9
XM_026936539.2 mRNA downstream 56115 24534919 ~ 24561278 (+) False slc6a9
XM_034303741.1 mRNA downstream 72061 24550865 ~ 24561278 (+) False slc6a9
XM_026936117.2 mRNA downstream 108403 24587207 ~ 24597109 (+) True zgc:113531
TU83028 other upstream 366300 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 1155846 23318504 ~ 23320343 (+) True G69509
XR_003404030.2 other upstream 2713888 21754080 ~ 21762301 (+) True LOC113540377
XR_003403979.2 other downstream 380222 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 1229023 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1419331 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 1749960 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 1809486 26288290 ~ 26292784 (+) True zgc:66427

Expression Profile