RNA id: XM_026935890.2


Basic Information

Item Value
RNA id XM_026935890.2
length 2284
RNA type mRNA
GC content 0.39
exon number 3
gene id tmem125b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27105494 ~ 27108411 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtgtgtgtgtgtgtttgtttgtgtgtgatcactGTTCACGGACCATGAGAGAGAGGCGGTGACATATATATCATGGATGGTCCTGAAGAAAACAAGACGGGTTTAACtctgaatttaaaataataaataattcaaagtggatttaatcttttttactTAACCTATAAATGCAGGAATTTAGATAAAACACCTCACTGTATACATAAAATCCCAATGTATGGAAATTTCTTGGATTCTAATGAAGAGGAAATGGACTAGAACGAATGACCAGTCTGAAGAAGGAATGTCAGAAGgacagaggacttcacgctttccggtttcttgTTTGAGGTGTGTGAACCAGTTATAAGATGCCTGGGCTCATGTTCCTGCAGCAGGATGTTGAGGATCCGGTGGAACTGTGGTGGTTCGGTGAGCCATGCATCTCTCTGCTATGCTACTCCTTCTCTGTTGCCCTGGTGCTCGGCCTTGGGACAGGCGGTGTGGTGCTCCTGTCTTCAGCAAGCTCTGCGGCGGCGTCCTCGGCTGTGTGGCGCCTGACCGTGGGCTCTGTCCTCTGCATCCTGGCCCTCGTACTTGTGCTCAAGCAGTTGCTTAGCTCAGCTGTGCAGGACATGGGCTGTGTGCGCAGTCGGAGACGCATCGTGCAGCTCCGCAGCGGTGGAAGCGTCGATCCGTCACTGCTGCTAGCCATTGGCCTGGCGCTGATGCTCGGTGGCGccacagtgctgctgtgctTGGCCTCGTCAAACATGCTGCTCACAGGGACACTTCTCTTGTCTTGTGGTGGCGCTGTGGTGCTGAGCGTGGTGACGTATGGAGCAATGAAGTATGTGTgggaaagaagagagaggagaaggaggaggataCGGAGAAGGGTGAGGGTGTACACAGtgacaggacagaggagtcACATGTGGAGAGACTCTGCGTCGAGTCAAGCTGGTCTGATATGAAaaagaatggaaataaaaagcTGAGGATTTCAGTTTTAGCAAGTCAAAACTGAGTCAAATTTGTTATTTAGAACAGAAGAAGAACCTCTGATAAGTAGCAAATCCTCTTCAGTCCAGTCACGTAGGCTTACTGCTAGAGGAGAAGAAGAGTTTGCAAAATCAAGTGTAACTGTCAAAGAGTGTTGGATGGTGTTTGATTTACACAATCACTCATTTCACATACACCATGATCATACTGTACCATCAGACTGGAGGATCAAATGacacatttctcacattttatacacactgtCATATTTAAATTCGTTTGTTGGTTTGATAAACGTGTTGCAGGTGCACAACAGacaagtaatttattttttattgtaaaaacatTGCAAGATCATTGCAGTCCTATTGACATCCCCTTCCTTGTCTACACCTGGTCTGTGCCAGTTCAACTGCGTCATGtttcaaacacaaatacaaactcTGTGGGGAAAAATACCCCAAGCAAGAATACTGTGTGCaaattagtttatttaatttagcaaTCAAAAAGTTAACAAACAAGTAAAGACTGAAGCAACACAGAATATAAGTTAATACAGAATAGCTTTAACTTTTCAAATAATGAAGTcttttattagcattagcatgaaacatctacacagatggctaactagctaactttaTCTAGGTAACATTCTCTAACATCAGCTATGTGAAACTAGAGGATCTAAATATCTAATTAAAATTCAGACAATTCAGTATATTTCGCTTGCTGAGAAATCACAGTACaacacactgacagtaacagTAACCCCATAACtgcattgtgtgcatgtgtaaaatTGTCTGTTTACCAGTTTGGCTGTTTTATCAGTTATTATTTGGAAAtttattacaggaaaatgtAATAGAATAACCACTGCATgtcaaaatatttgttttaaagagaattttatttaaaaatgattttatgccCGTTACACACCTCTTATTCACTGAATCTTTTGCAAAGGAAGTTAGCAATTTATCAAGCAGAAGTCTTATTTTTATAGCAGAAAAACTAAGTTATGGTTATAATGCTAGATGGAATAAAATCttagttaaataaaattttattctatattataaAAGACATTTCTTGTTTTTGGAGTCACACTAAtggaaacaaaattaaaaatagaccAGTTTTCCTGGATTTCAGTATTTTCCAATATGAAATTGTATATCAGCTGAATAGAAtaaattttttccctttttttgttttaaagaatatttctaTTCAgcttttgaataaaaataaactatgaTTAAAAAATTCAGACAATAAACTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85140 lncRNA downstream 69032 27031317 ~ 27036462 (-) True G71815
TU85141 lncRNA downstream 69642 27031317 ~ 27035852 (-) False G71815
TU85066 lncRNA downstream 170297 26934990 ~ 26935197 (-) True G71765
TU85065 lncRNA downstream 209930 26894681 ~ 26895564 (-) True G71764
TU85024 lncRNA downstream 246039 26847346 ~ 26859455 (-) True G71734
TU85185 lncRNA upstream 34695 27143106 ~ 27151314 (-) False G71854
TU85183 lncRNA upstream 40499 27148910 ~ 27151314 (-) True G71854
TU85228 lncRNA upstream 65641 27174052 ~ 27174536 (-) True G71892
TU85232 lncRNA upstream 71523 27179934 ~ 27180140 (-) True G71896
TU85239 lncRNA upstream 83051 27191462 ~ 27191809 (-) True G71903
XM_026937110.2 mRNA downstream 123285 26981189 ~ 26982209 (-) True LOC113540546
XM_026936874.2 mRNA downstream 171975 26917159 ~ 26933519 (-) True prkci
XM_026936963.2 mRNA downstream 191914 26903908 ~ 26913580 (-) False skila
XM_026936961.2 mRNA downstream 191914 26903908 ~ 26913580 (-) True skila
XM_026937243.2 mRNA downstream 216160 26881468 ~ 26889334 (-) False nadkb
XM_034303292.1 mRNA upstream 401 27108812 ~ 27143851 (-) False cfap57
XM_034303294.1 mRNA upstream 657 27109068 ~ 27143851 (-) False cfap57
XM_034303293.1 mRNA upstream 657 27109068 ~ 27143851 (-) False cfap57
XM_034303295.1 mRNA upstream 5899 27114310 ~ 27143851 (-) True cfap57
XM_026936204.2 mRNA upstream 45088 27153499 ~ 27158015 (-) True LOC113540028
TU85159 other downstream 4636 27096602 ~ 27100858 (-) True G71832
TU84853 other downstream 554464 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 554464 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 729406 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2800568 24304374 ~ 24304926 (-) True G70255
TU85245 other upstream 95372 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 286946 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 287740 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 320009 27428420 ~ 27432678 (-) False LOC113540508
XR_004578066.1 other upstream 439341 27547752 ~ 27555986 (-) False pcyt1aa

Expression Profile