RNA id: XM_026935895.2



Basic Information


Item Value
RNA id XM_026935895.2
length 1346
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113539830
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20091887 ~ 20099077 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


ccacacaggtaCAGAGGCGCGCGCGCACACCTAGGGGAAAGTTAAAATGGAATTATTATAGATTAAATGCATATTAGAGACACCATATATAGGCATAGGGAAATTAACAGACTTCCTTCTTATGAAActaaacaccacactgaaatGCTAGTCCAGTGAATAAGCTCCTTCACTCCTCCCATGCAAATGATTCACTTTGAGTAAGTCCTGCTAACACGACAGGCTCATTTTCCACTGTGGACTCGTCTGGTGATGATAGACAAGTTCGTTACTGAAAATAAGCttgggaaagttttttttttttacaagaattTTTAACACATGTTTAAACACAAGTATGTTAGAGTATTGAGTAGAAACGCGATAATGTTTTGCGGATACTGGAATGTGGACTTCGTACGCCTCCTGTGTTTCTCCCTCATGCTGGCTGGAGTTGCCTCAGAATCAGTGAGACCACCACCCACATTTGAAATCATTGAGAAAGGAAATTATCTCAATTTTCACGCAAGTGCCCCTGAATCAGAATCGCCTCACTGCTGGACGTACATGTTTTGGTACAGAAAATGCAATGAGGAAAAAGTCACTACAACTGCAACTAAAGACAGCAATTGGACAGCCAAGGTGGAATACGATGCTGCCTGCAAGTACCATGTTCAACTGCAGGCAAAATATGATACAACGTACTGTGGGGACGTTGAACTTGACAGTAACATAAGCAAACCTGTGTATTTCGGTCAGGATGGTGATCCAGATTTGCCATTTAAAGTGTCTATGATTGTCATCCCTGTAATAGCATGCTCTTGTCTTAGCATTGCTATAGTGCTGTTTAGGAGACACAAGCAGAAATTATTCCCCAAAGTTCCCAGTCCATCACATTTCTTCAATGATATGTTTGACAGGAACAAAGAAATGACAAAGAGCCTATATGTGAGAGAACTCTATGTGCCTGATGAAGAGGTGGTGGAAGAGATCCAACAAGTCATGAATTCTAATCAGTAAAACAACATAAAGGATGAACATGTTctagatgaagatgaagatgccCAACAACTCAGCAAAGGAGGAATACAATGCAGCTTTGCAGATACACTGTAACCCTAGCCCTAACCCAAGTGCAACCagaatatactgtctaatgtggTAATTCTTGATATATGTGCTATAGCTCTGCAAGATGTCATCCTCTGCCTTATTCCAATCAGGTCTGGAGACCGAGAGGGTCATGGCAGAAGCTCCTTTCAAAGTATTTTTCTACTGAtattgtgctgtttttggaTTGATGTCTTCCTGCATTTCATATTTAACCCGAGTGATACACGTCACTCTgacatgaccaaaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU80206 lncRNA upstream 24722 20066030 ~ 20067165 (+) False dock11
TU80207 lncRNA upstream 24849 20066030 ~ 20067038 (+) False dock11
TU80167 lncRNA upstream 125999 19962599 ~ 19965888 (+) True G67642
TU80168 lncRNA upstream 126801 19962599 ~ 19965086 (+) False G67642
TU80111 lncRNA upstream 174718 19916600 ~ 19917169 (+) True G67595
TU80393 lncRNA downstream 150981 20250058 ~ 20275675 (+) True G67827
TU80554 lncRNA downstream 381523 20480600 ~ 20481755 (+) True G67958
TU80678 lncRNA downstream 536271 20635348 ~ 20635565 (+) True G68054
TU80695 lncRNA downstream 593186 20692263 ~ 20693053 (+) False G68070
TU80696 lncRNA downstream 593186 20692263 ~ 20693111 (+) True G68070
XM_026936960.2 mRNA upstream 4582 20081770 ~ 20087305 (+) True LOC113540456
XM_026936959.2 mRNA upstream 16852 20069061 ~ 20075035 (+) True LOC113540455
XM_026937321.2 mRNA upstream 24667 19990684 ~ 20067220 (+) True dock11
XM_026937098.2 mRNA downstream 3404 20102481 ~ 20129464 (+) True kirrel1a
XM_026937099.2 mRNA downstream 3405 20102482 ~ 20129464 (+) False kirrel1a
XM_026935939.2 mRNA downstream 48747 20147824 ~ 20154777 (+) True fcer1g
XM_034303348.1 mRNA downstream 60235 20159312 ~ 20166249 (+) False hacd4
XM_026936479.2 mRNA downstream 60243 20159320 ~ 20166249 (+) True hacd4
trnah-gug_5 other upstream 262997 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 263505 19828311 ~ 19828382 (+) True trnah-gug_4
TU79253 other upstream 1233235 18856456 ~ 18858652 (+) True G66864
TU78855 other upstream 1883323 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 1961382 18113444 ~ 18130505 (+) False frem1a
trnar-ucu_2 other downstream 1948 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 48718 20147795 ~ 20154771 (+) False fcer1g
trnaa-cgc other downstream 253337 20352414 ~ 20352485 (+) True trnaa-cgc
TU80896 other downstream 921181 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 1228269 21327346 ~ 21327420 (+) True LOC113540699

Expression Profile


XM_026935895.2 Expression in all Baseline Samples

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
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XM_026935895.2 Expression in each Bioproject

Bar chart with 3 bars.
XM_026935895.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.