RNA id: XM_026935896.2


Basic Information

Item Value
RNA id XM_026935896.2
length 1359
RNA type mRNA
GC content 0.45
exon number 2
gene id si:ch73-335l21.2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13391809 ~ 13394172 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCAGGTAGAATAGAAATTTAAATCACAAGCTTGTCAAATGATGATGAGAACTGTATATTAACTAGAGGAGAAGAAATGAGGCATCAAAATCATCACTGCTCCCTCTCCTAGAAACCAAACCATCTCTAGGTAATAAATGTCAGGGAAACTTGCCCCCTTGGTAGGACACAAGGCATAGGATCAAGGGAATTAAAGAGGGGGGTAGAGAAAGTGAGCTTACAcataatccaaaacatacatGTGTTCATAAAAGCATGAGACTTGACAGAGGTGACACTGAAGGCTGagtatatattttcttttaatgtgaCATATAAAAATGGACGTGCTGCTCAAATGCAAGAAGAGACACAAGGCTTCACTGGAAAAGTAGGACCAGTAATTCTTTGAAAAGCTCTGTCTAACAGACAGGGTTCCTTTCAGGTTCCCAAATCACATTATAGATCTCAATCTCAGAAGTTTCCATCCACAGTCTACCTCCATGTCAGTGGCCCCAGTACCAGTTGCAACATCTGCCAAGGAGGAAACCTCTGCCAGCGGGGATTCCCCAGAAGTGGAATGCCCCGTGTGTTACCAGGAATATGATAAAGATCGCAAGCTCCCACGTATGCTGGAATGCCTCCATGTCTTCTGCACAGAATGCCTTCATAATATCCAGCTGTCCCCTGTCCACCCACCCGATCCCAACAGCCCTCCTTCCATCTCCTGTCCCTTGTGCCGCCACTCCACCCCACTAGAAGGTGGCGATGCACACTCCCTCCCGTGCAACTCCCGTATCCTCGCTCAGCTACCTCCTGTAACTTTTCGCCTGCCTGTGTCAGTCTCAACCCGGCTGGCTACTGTCACTCAGAGAGTGATCCTGTCTCTGGAGTCACGGGATGCTCggtttattattttacccaCAGTCAGCCTACGGGTGGAGCAGATGGGCGAGGGCACAAGCACGCCTGAGTCCATAGCAAGTACAGTGGAGGGgctgaggaggagaaagagcCTGATGTGTGTCCAGATGTTGGTTGTGATATTCTGGATGCTTTTTGTCCTGGCCTGCGTGGTGGGAGTGCTGTTCGGCCCTAATTTGTTCCACCACTGAAAGACAGAACAATCACAGAATTCGTCTATCATATGTAATTTAATgcaaaattagcaaaataattCAGTTAAGCATACAAAACCTCAAAATCTACTGTATAgtactgttttttatttcttaataaatttGACATGTTTTGATTTAGCATACAGTGTGACCACTAATTACTACCTTCACTTTTGTAGCCTTAGTTCCATTGCCATAATCTCTGAATCCATATACTGTGTAGTGGCTGtctaaatatcaaaataaactgGAAAATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75666 lncRNA upstream 3857 13387598 ~ 13387954 (+) True G63889
TU75437 lncRNA upstream 105977 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 114107 13276821 ~ 13277704 (+) False slc16a13
XR_004578006.1 lncRNA upstream 124777 13259391 ~ 13267034 (+) False LOC117597082
TU75440 lncRNA upstream 125332 13258874 ~ 13266479 (+) True LOC117597082
TU75685 lncRNA downstream 23049 13417221 ~ 13417441 (+) True G63901
TU75682 lncRNA downstream 65190 13459362 ~ 13467726 (+) True G63898
TU75739 lncRNA downstream 110288 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 175830 13570002 ~ 13572833 (+) True G63976
TU75783 lncRNA downstream 301477 13695649 ~ 13748072 (+) False G63973
XM_026935960.2 mRNA upstream 16761 13328033 ~ 13375050 (+) True si:ch73-335l21.1
XM_026935961.2 mRNA upstream 16761 13328033 ~ 13375050 (+) False si:ch73-335l21.1
XM_026935963.2 mRNA upstream 16761 13328034 ~ 13375050 (+) False si:ch73-335l21.1
XM_026935962.2 mRNA upstream 42268 13328033 ~ 13349543 (+) False si:ch73-335l21.1
XM_026935976.2 mRNA upstream 64592 13311881 ~ 13327219 (+) False agfg2
XM_026937145.2 mRNA downstream 5263 13399435 ~ 13416861 (+) True dvl2
XM_034303680.1 mRNA downstream 26361 13420533 ~ 13436596 (+) True acadvl
XM_026937015.2 mRNA downstream 49622 13443794 ~ 13450823 (+) True LOC113540489
XM_034303789.1 mRNA downstream 74380 13468552 ~ 13475037 (+) False LOC113539889
XM_026935990.2 mRNA downstream 74395 13468567 ~ 13475037 (+) True LOC113539889
TU74787 other upstream 1096688 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1694516 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2728404 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2826087 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2860283 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 24205 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 76597 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 164451 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 311404 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 861572 14255744 ~ 14269340 (+) False brms1

Expression Profile