RNA id: XM_026935904.2


Basic Information

Item Value
RNA id XM_026935904.2
length 2770
RNA type mRNA
GC content 0.46
exon number 5
gene id serpinh2
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12951069 ~ 12976437 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGTGAAGCAGGAATCATGGCGCAGGTTAAACAGGCGGGTTATTGTTTAGACGCCGTGCTGAAGTGATTTAAGGCGGCGGTGCTGAACACAGCCTGTAAATCTCTGCGTGGCGAAACGGGAGAAATTTCGAGAAGGGGCTAAATGCCTTGACTGGAGTACAGGCTCGATTTGGCTTGAGGGTAAGTAAAGGAAAGCAAACACAAAGAACTTCCTCTGCCACGTTGGAAATCTCGCCAGGCTCTGTTCATTCCTGTCCCACTGAAGAACGGAGCAAGAGAGGAAACTGCAGCACATTACGCTTTGCCGCCATGCTGCCACCTGCTGCTCTGTGTTTATCACTGGTCTTGATGGTCAGCACCTCTACGTCCCAGCAACCCCTGACCTCAGGTGATCCCCAGCAGAAGAGCTTTTCATCCCTGAGCCACCCCAGCTGGTCCTTAGGGCTGGAAGTGTACAGGGCCCTTCGTAGTGAAGGCTCTCACATCAACACCCTCATTTCGCCTGTACTGCTTGCCAACTCACTGAGTGCGTTGAGCCACACAGCCAAGGGAGCCACAGCCAGGCAGCTCCAGGAGCTCCTAAAGACCAACAAGGATGAGAAACAAGCTGAGAAATCTTCATCAAGTCCACTTAAATCCATGAGAAAAGCAAATGGAACCAGCTACATGCTGCATGGTTCCTCAGCTATCTTCTCCAAACAGGTTCCTACACTGGAGAGCAGCTTCCTGGAGGAGCTGCAGGCCCAGTTTGAACTGGACCATGTGGCTTTAGGTGCAGGAGATAAACAGGGAGAAATGGAGAAGCTCAGGTCCTGGGCCAAAAGTGGAATGGGAGGAGTGAAGGAGATGCCACTGAATGAAGGACCAGATGCTAAAGAAGGAGCCCTGATCCTGGCCAGTGCTCTGCATTTTAAAgGGTTTTGGGATCATGGCTTtgacaaagaaaatgaagaCTTGCGAAGCTTTTTGGGGACCAAGTACACCAAAGTGTATATGATGCACAGAGCAGGAGTATACCGTCACTATGAGGACATAGAGAATATGGTGCAGGTGTTGGAGCTGGGTCTGTGGGGTGGAAAGGCCAGCATGGTGCTTCTGTTGCCTTTCCATGTGGAGAGTCTGGCCAGGCTAGAGCGCGTGTTGACACTCGAGCAGCTGGAGAAATGGCTGGGGAAGCTGAGCAGCATGAGCATGGCACTGTCTCTGCCCAGGGTCAATGTCAGCAGCACACTCAGCCTACAGAAACAGTTAGTCGCACTGGGCGTGGTCGATGCCTGGGACCAGAAAGTGGCAGATTTCTCAGGTCTTGGGAAGGGGAAGCTCCATCTGTGGGATGTTCTTCATTGGGCATCCCTGGAACTGGCGTCTGATTCTGGAAGTAAGGACGGCATAGACGAGAATCAGCATGTGGAGAAACCCAAACTTTTCTATGCAGATCATTCCTTCATTATACTGGTGAAGGATAACAGCACTGGAGCTCTGCTGATGTTGGGTGCACTGGATCTGGCAGAAGGAGCTACACTGCATGATGAGCTATAAAGGATGGATGACGTATGGATACTGTTTTCAGTATCTCTTCAGTCTCTTCAGTAAAATGGTCCTTGAAGAACGGTGACAGCCATTTGTCCAGTGACactgtgtatacatatatatatatatatattttaaataaatatggaatGTGATGAGTGAGTAATTATAGGTCCAATTTTACAGTACTgtaagtggggaaaaaaacagagaagacaTGATTAAGGGTCGGCAGAAGCTTGTATTATTTCTAACACCTATCGAGCTCCATTAAATGTGCAAAGAAGAGCTAATGGAAGGTGTAAAACGATTTATTAGAGCTTAGAAAATCTAGGCGAACAATTTCACCCAGGCTGAACCTGGAACTCATTCCATTATTGTAACAAACGGGCTCACCATGAGCGCACGCCAGGCATTCACACACTGATGGCCCCCCTGAGAGATTAATCCTTTCACACTTGTGAAATATTCAGTGGATTGTTCTCAGATCTTTCTGTGATAATGTGTCACTTTTACTTATATTCATATTGGCATCCCGACACATCTCCTTCTCTCATTTTAACACTCGGAGATCTAAAGACTCAATAAGGCAACGTGATCTTTTCTACCAAATACAATATCTAACACTGGTAGTCCCAAAGTTGGCAAGCTTATCCAAACCCAAGCCAAAGGGTGCATTTACTTTCTCACCACACACCACTTGCAAACTTAATGATCTGACAGTTGCACTGAACTCTGACATGGGATGAGCttgttctccctctctctctctctctctctctctctaagttGTTCCCAAATAGATTGGGAGCTCCAGGGGGTCAAGCTCTAAGCTGTCATGCCGATTCCCACTCCAGGATCAGTCCCCTGAGAGAAAGATTGCTCAACCAGGCTGTTATTGATGGGATCAGCTTAATACTAATGACGCTAATGACTCGAGACCACTGTCAACACCACAGGCAGACGATAAACCTTTAATCTTTTAATGCCTCCTCGGATCAATGGAGGCTGTGCCCTTGCGACACCATTGTCCGTTTAGAGTGGTTAggaattacatttaaaatgctgtttgtgtggtttttttatgtaatgtgttatgtgttttttttttaattttataatgaaatgttaCAAACGATGTTACTAAACTATTGGTATTACTGGATTGGTAATGTACTGTATGGCAATGGTATTATTTCAATTAATGTCAGAATAAAATGGCAGAAACATGAAAtgtat

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577946.1 lncRNA upstream 24082 12922870 ~ 12926987 (+) True LOC117596991
TU75285 lncRNA upstream 116739 12801894 ~ 12834330 (+) True G63547
XR_003404040.2 lncRNA upstream 178247 12768585 ~ 12772822 (+) True LOC113540557
TU75255 lncRNA upstream 178266 12770726 ~ 12772803 (+) False LOC113540557
TU74949 lncRNA upstream 592821 12357832 ~ 12358248 (+) True G63242
TU75450 lncRNA downstream 143031 13119468 ~ 13119677 (+) True G63685
TU75461 lncRNA downstream 159222 13135659 ~ 13135860 (+) True G63696
TU75429 lncRNA downstream 222570 13199007 ~ 13199862 (+) True G63666
TU75479 lncRNA downstream 237540 13213977 ~ 13219859 (+) False tmem88b
TU75440 lncRNA downstream 282437 13258874 ~ 13266479 (+) True LOC117597082
XM_026936981.2 mRNA upstream 89852 12795941 ~ 12861217 (+) True efnb3b
XM_026937280.2 mRNA upstream 162844 12777177 ~ 12788225 (+) True wrap53
XM_026937160.2 mRNA upstream 183165 12742257 ~ 12767904 (+) True gigyf1a
XM_026936009.2 mRNA upstream 217591 12718253 ~ 12733478 (+) False epoa
XM_026936299.2 mRNA downstream 4412 12980849 ~ 13115167 (+) True dnah2
XM_034303612.1 mRNA downstream 139779 13116216 ~ 13198549 (+) True kdm6ba
XM_034303611.1 mRNA downstream 139779 13116216 ~ 13198549 (+) False kdm6ba
XM_034303610.1 mRNA downstream 181011 13157448 ~ 13198549 (+) False kdm6ba
XM_026936937.2 mRNA downstream 181011 13157448 ~ 13198549 (+) False kdm6ba
TU74787 other upstream 655946 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1253774 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2287662 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2385345 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2419541 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 441940 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 494332 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 582186 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 729139 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1279307 14255744 ~ 14269340 (+) False brms1

Expression Profile