RNA id: XM_026935909.2


Basic Information

Item Value
RNA id XM_026935909.2
length 1545
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC113539840
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28065067 ~ 28069266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgcgcatgcgcagtatAATTAAATCGCGCAGAGGCAGAAGCTAGCATAGCGTTTAGCGTTAAAGCTAAGTTTACCCTGAATTGGTTGAAGCTTTCGTGacctttttattcatttttttccacgcACAAAACGCAAATTTCACTCAGCAATGAATAAGTCAAGTTTCAAATCAAGCGATAATGCAGAAGGACCCGATAAAGTTGACATGTCGCTTGATGACATTATCCGGTTAAATAAGAAGCAGAAGCAGATCCAGGGCCAGAAGGCGGCACTGAGGAACCAGAGGCTCGGCGTTACAGGACGATTAGCACCGGGGAGACGAGCAGGAGCGCCACTGAACCGGGGAGGAGGGGTGAATAAGCTGTTCAGGCGGCGTGGACAGGGCGTCATCACCGGCCTGGCAGCGAGGAAGGCGGCCCTGCTGAAAGGCGTCAGTCCGTTAAACCGACCCGCTCTGAACAGAGCCAATCTGAACAAACACAGCACTAACCGAGCTCCTGCGAAACGCTCCACTCTCTTTCAGAGAACACGGCCGTTTGTTTCACagcgcagacacacactcacacacatgcagacgcAGAGAAGGCCGTACACGCAAGCGGACGCTCGGAAAGCTCCGGGACGCGTCTCTAACAGACCCTTCAGGCTGCGCAGGAAATGGAATGCTCCTCCAGTGAACGAACCGCAGAGGGAGGCCCGCCAGGCTACATTCCTCTCCAGAAGAGGCCTAAAGgTTCGTGCTAACGTGCAGAAGACAACACCGATGCAAGCAgctcagagaacacagagaacccGACCGTGGCGCACTCCTCTGAACAACAGTGGCATTCTCACCGTGTCTATAGATAACCCCGGAGCCAGAACTCAGCCCGAACCCGCCCACTCGTGGTCGCTCCACCCACCCATGGTGACTCCACCTCCTCAGAACACAGCACCAGAGCCTGAGAGGAAAAAGCCCAAAGGGGTGGCGCTGCAGTTCGACATCAACAGCGTGGGAAAACAGCAGACGGCCATGACGCTTAACGAGCGCTTCCGCATCCTGAAGATGAAGCGCATGGCGGCAACGCAGCAGAACGCCAGAGGCGGACGCTTTGTCACCGTGGGCTAGCACCTGACACGGAGAGCCAATCACACAAGCCCGCCGAGGTCACATGACTCCCTTGGCACCTTTGCGGCAGCACGCTGACGGACGGCTTTTCTCCTCAGCTGCTCTGATGCTCTTTGAACAGACTTTCCTGCTCCGAAGAGACTTCTTTTTCCCCAAGGTCGGGATACGGATTTGACAGGAATTCTTTCCATAATTTCCATAAGTTCCGCATTTGCCAATTTTTCAGTgacagttcctttttttttccaaagccGGAGTTCCTGTGTTTTGCTTATTTGTCTAATATTAAGCTGATCTTTTTACGTTaagcaaatttttttaaaaatgttttacgACCTGCCAGGAGATTGGTTAGTGCGTATTGAGTTTTTTGTTGAACAGCTGGgtgttttaaacttttttttttttctaaataatatttcaaaaaataaacacgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85626 lncRNA upstream 52609 28011744 ~ 28012459 (+) True G72236
TU85492 lncRNA upstream 505641 27556204 ~ 27559427 (+) True LOC113540592
XR_003404048.2 lncRNA upstream 505958 27556085 ~ 27559110 (+) False LOC113540592
TU85674 lncRNA downstream 45185 28114451 ~ 28122142 (+) True G72276
TU85711 lncRNA downstream 233585 28302851 ~ 28383408 (+) False insig1
TU85733 lncRNA downstream 247138 28316404 ~ 28328181 (+) False htr5ab
TU85742 lncRNA downstream 399682 28468948 ~ 28471765 (+) True G72336
TU85789 lncRNA downstream 505656 28574922 ~ 28578950 (+) True G72378
XM_026937080.2 mRNA upstream 10749 28047199 ~ 28054319 (+) True nmur1b
XM_034303869.1 mRNA upstream 56875 27972641 ~ 28008193 (+) True bcl2b
XM_026937237.2 mRNA upstream 56875 27972645 ~ 28008193 (+) False bcl2b
XM_034303291.1 mRNA upstream 98780 27957885 ~ 27966288 (+) True kdsr
XM_026936600.2 mRNA upstream 108157 27947400 ~ 27956911 (+) False vps4b
XM_034303983.1 mRNA downstream 35239 28104505 ~ 28111007 (+) True pfn2l
XM_034303984.1 mRNA downstream 35242 28104508 ~ 28111007 (+) False pfn2l
XM_034303981.1 mRNA downstream 43583 28112849 ~ 28152505 (+) True zbtb41
XM_034303982.1 mRNA downstream 70451 28139717 ~ 28152505 (+) False zbtb41
XM_026936391.2 mRNA downstream 70452 28139718 ~ 28152505 (+) False zbtb41
trnat-ugu_8 other upstream 443685 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 444391 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 507166 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 508420 27556517 ~ 27556648 (+) True LOC113540695
trnat-ugu_5 other upstream 575743 27489253 ~ 27489325 (+) True trnat-ugu_5
TU86406 other downstream 805090 28874356 ~ 28912104 (+) True G72873
TU86682 other downstream 1550727 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 2676865 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 2676865 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 2992464 31061730 ~ 31097888 (+) False spsb4a

Expression Profile