RNA id: XM_026935910.2


Basic Information

Item Value
RNA id XM_026935910.2
length 2099
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC113539841
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27274172 ~ 27286654 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGACAGAGCAGTGTGCAGTAACACTGACCCCACTTCCACTGAGTTGTCGTTGTtgttctctccgtctctctgaGCGATGGAGAACAGTCCTCTACAGGTGCTGCATCTCGACACCGCTCCGTATCCTGACCAGAGACCCGGCGCCAGCGGCCTCAGGAAGAATGTCCGTGTTTTCCAGTCCCAAAGGAACTATCTTCAAAACTTCATCCAGAGTATCTTCTCCTCCATCGACCTGCGAGACCGCCAAGGCTCCACCATGGTTGTGGGAGGAGATGGACGTTACTTCAACACCAGCGCGATGCAGGTCATAGTACAGATGGCTGCGGCCAATGGGATAGGCCGTCTGGTGATTGGTCAAAATGGCATCATGTCCACACCGGCTGTGTCGTGCGTAATCAGGAAGTTCAAAGCGATTGGTGGATTTGTGCTCACTGCCAGTCACAACCCTGGAGGACCAGATGGAGATTTTGGCATCAAATTCAACATTGCTAATGGAGGGCCTGCTCCCAACGCTGTGACAGATAAAATCTTCCAAATAAGCAGAAGTATAGAAGAGTACGCCATCTGCCCTGAACTCACGGTGGATCTGACAACACTCGGCAAACAGAGTTTCGACCTGGAGAACAAATTCAAACCGTTTACAGTTGAGATTGTGGACCCAGTGGAATCCTATGCCAACATGCTGAGGAACATCTTTGACTTTGCGGCGCTGAAGGAGCTTCTATCAGGCCAGAACCACATACGCATCCGGTTAGATGCCATGCATGGAGTGGTTGGCCCATATGTGAAAAAGATCGTGTGTGAGGAACTGGGTTCTCCTGCCAACTCGGCCATTAACTGTGTCCCTCAGGAAGACTTCGGTGGCCAGCTGCCAGATCCGAACCTAACTTACGCTGCAGATCTGCTCGAGACCATGAAGAGTGGCCAGTTTGACTTTGGAGCTGCCTTCGATGGTGATGGTgACCGTAACATGATCTTAGGGAAAAACGGCTTTTTCGTTAACCCCTCAGATTCTGTTGCTGTAATTGCATCAAACATCTTCTGCATCCCCTACTTTCAGCATATGGGAGTGAGAGGCTTTGCCAGGACAATGCCCAGCAGTGGAGCGCTTGACAATGTGGCCATAGCAACCAAGATTCAACTGTATGAAACTCCACCTGGTTGGAAGTTCTTTGGAAAGCTGATGGATGCTGGTCGCCTTTCGCTGTACGGAGAGGAGAGCTTCGGCACAGgTGCAGATCATATCCGTGAAAAGGATGGGCTTTGGGCTGTGCTCGCCTGGCTCTCCATTCTTGCTTTTAGAAAACAGAGTGTTGAGGAAGTCATGATCGATCACTGGAAAACCTATGGCAGGAACTACTATACCAGGTACGACTATGAAGACGTGGAGATAGACATAGCAGTGGACCTGATGCTGGATCTCGAGGTGGTCATTTCAGACAAGGCATTCGTTGGACAGATATTCACAGTAGGAGAGAAAACGTACGAAGTGGAGAAAGCAGACAACTTTGAGTACAACGACCCTGTAGATGGAAGCGTCACAAGGAACCAGGGCCTGCGAATTATATTTAAAGGTGGCTCTCGCATTGTTTTTCGTCTAAGTGGAACCACACTGGGTGCCACAATACACCTCTACATCGACAGCTATGAGAAAGATGAAAATGAGATTTTACAGGATCCACAGGTGAAGTTGGCCGACCTGCTGAACATAGCGCTGAAGTTGTCGCAGCTGCCTGAGAGGACGGGGAGAACCGGTCCTACTGTCATTACAtgatatatatttgtgttttttgtctacgtttttttgtaataaaattcgctttttgaaaaaaaaaaaaaagttgtagtGGCGTTTTGTCATGTGTACTCACCTCCTCGAGCGCGCGTCTGTATGTTCGCGCGCCAGTTTCTGTCCAGTGTTGCTAGGCAACGGCAACAGAACGTCGACACGCGCCTTGTCAAACATTAACATCCAAATGCTGAAATCTGTCCAGCACTTCATAACCTTAAGCTTCAGAGTTCCAGTATGGAGGTTGCTGAGACTCTCTCAAGCCAAGTCCTCAGGACCAGGGGGGATGAAAAAACCAGAGACAGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85207 lncRNA upstream 44072 27229862 ~ 27230100 (+) True G71874
TU85202 lncRNA upstream 55717 27218227 ~ 27218455 (+) True G71869
TU85201 lncRNA upstream 56333 27217352 ~ 27217839 (+) True G71868
TU85197 lncRNA upstream 77799 27196001 ~ 27196373 (+) True G71864
TU85154 lncRNA upstream 200096 27073841 ~ 27074076 (+) True G71827
TU85277 lncRNA downstream 331 27284060 ~ 27284463 (+) True G71941
TU85275 lncRNA downstream 3444 27287173 ~ 27289705 (+) True G71939
TU85279 lncRNA downstream 9627 27293356 ~ 27295364 (+) True G71942
TU85325 lncRNA downstream 87744 27371473 ~ 27371678 (+) True G71977
TU85328 lncRNA downstream 97119 27380848 ~ 27381072 (+) True G71980
XM_026936094.2 mRNA upstream 3378 27265570 ~ 27270794 (+) True LOC113539951
XM_034304033.1 mRNA upstream 37075 27174061 ~ 27237097 (+) True LOC113540389
XM_034304034.1 mRNA upstream 37075 27174061 ~ 27237097 (+) False LOC113540389
XM_026935836.2 mRNA upstream 123048 27144064 ~ 27151124 (+) True ebna1bp2
XM_034303201.1 mRNA upstream 235813 27030740 ~ 27038359 (+) False LOC113540681
XM_026937006.2 mRNA downstream 29348 27313077 ~ 27318012 (+) True LOC113540484
XM_026936714.2 mRNA downstream 42022 27325751 ~ 27371031 (+) True pde4bb
XM_034304151.1 mRNA downstream 101078 27384807 ~ 27405810 (+) True sgip1b
XM_034304152.1 mRNA downstream 101078 27384807 ~ 27405810 (+) False sgip1b
XM_034304153.1 mRNA downstream 101078 27384807 ~ 27405810 (+) False sgip1b
XR_003404108.2 other upstream 160918 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 610090 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 898393 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 909939 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 981388 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 205524 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 272788 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 274036 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 336876 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 337582 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile