RNA id: XM_026935915.2


Basic Information

Item Value
RNA id XM_026935915.2
length 1630
RNA type mRNA
GC content 0.45
exon number 10
gene id tcea1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22670489 ~ 22677200 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCTTAAGAGACGTAAACACATCTCCTTCCTGCCTGCGCTGCTCGGCGGGCCGCCGGTGGGCTTGTGCTAGACGCGAAAGATTAGTCGTTTTAAACCCGCTTCTGCTTCATTATTAGTGAATAAATCTTCACCATGGGCaagaaggaagaggaagaggttATTAGGATCGCGAAGAAGATTGATAAACTGGCACAGAAGAAAAACGGGTCAGGGGCTTTGGATCTTCTCAAGGAACTGAAGAACGTGCCCATGACTTTGGAGTTGCTTCAGTCGACCAGGATCGGGATGTCTGTGAACGCTATCCGCAAGCAAAgcacagatgaggaggtgacaTCGCTGGCTAAATCTCTTATCAAGTCCTGGAAGAAGCTTCTGGATGAGCCTGCTGGTGGAGATAAAACCactgaggagaaaaagaaggagcCTGCAGCACCGGTCATGTCCCAATCACAGGGTAGCCCTGAGCCCAGAGAGGAAAGCTCCAGCAGTAATTCAAGCAGTAAGAGCGAGGCTGTTGATATGATGCCCACCACCCACACATCAGCGTTCCCTCGAGCACCAGGAACGTCCGACTCGGTGCGCCTTAAGTGCAGGGAGATGCTGTCCAGCGCTCTGCAGACTGGAGATGACCATATCACCATCGGGGCCGACTGCGATGAACTCGGAGCCCAGATTGAGGAATGCATCTTCCTGGAGTTCAAAAACACCGACATGAAATATAAGAACCGCGTCCGAAGCCGAATCTCGAACCTTAAGGATATGAAGAACCCCAACTTGAGGAGGAATGTTCTTTGTGGCAACGTGCCTCCAGATCGCATCGCCAAAATGACCGCAGAGGAAATGGCCAGTGATGAACTGAAGGAGATGCGCAAGAATATGACCAAAGAAGCTATCAGGGACCACCAGATGGCCAAGACTGGAGGCACCCAGACTGATCTGTTCACCTGCGGGAGATGCAAAAAGAATAAGTGCACCTACACACAGGTTCAGACTAGAAGTGCTGACGAGCCCATGACCACATTTGTCTTCTGCAATGAATGCGGCAATAGATGGAAgTTCTGCTGAAAATGGAGCGGGTGTCGTCAGTGCAGAGAAGTGGCTAAATTCCTGGACCATGACTTCGTATCATCAGCTGATAGGAACTTTTAGGTTTTTTTGGCCTCCATCGTACCACGGCGGCTATGGACACCATCAATGTTTTTATCATTGTTTTGGTGTGGATCAAAACAATGTCCTGTGTTTTAACTTGACGTATAGCTAGGCTCAGCCTTTGGACTATGATCAGTGTCGTTTCTTTGTTCTTCCTTTAACATCAGGTTTTTATATGTAGTTTAATGGAAGTATTTTTCACAACATTCACATGTAGAAAGTTATACCTTGCCCTAATGGAAATTACCAGTAGTTAGGCCATCTAATATTCTTAGACTATTTTAcccaataaattaaaaactattaaGGCTTTTAAATTTAAGATGTTGATTTCTTTTAGCTtgacacattttcaaaataagCTAGACATAAGAAGACCCTTCCCActtttattgatatttatatgCATGATTGGCAAATTtctactgtttacatttttttttcttttcaggagtaaaacatttttccaaGACTTACAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006414 translational elongation biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82061 lncRNA upstream 18042 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 142933 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 273388 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 282744 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 425664 22244588 ~ 22244825 (+) True G68947
XR_003404049.2 lncRNA downstream 249610 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 324798 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 607354 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 614210 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 653833 23331033 ~ 23331529 (+) True G69514
XM_034303428.1 mRNA upstream 18132 22649810 ~ 22652357 (+) True LOC113540463
XM_026936971.2 mRNA upstream 18132 22649827 ~ 22652357 (+) False LOC113540463
XM_026936932.2 mRNA upstream 24051 22641742 ~ 22646438 (+) True si:dkey-94e7.2
XM_034303970.1 mRNA upstream 24051 22642212 ~ 22646438 (+) False si:dkey-94e7.2
XM_026936165.2 mRNA upstream 125902 22538818 ~ 22544587 (+) True ankrd33bb
XM_026936312.2 mRNA downstream 25779 22702979 ~ 22737767 (+) False atp6v1h
XM_034303663.1 mRNA downstream 25779 22702979 ~ 22737767 (+) False atp6v1h
XM_026936311.2 mRNA downstream 25779 22702979 ~ 22737767 (+) False atp6v1h
XM_034303661.1 mRNA downstream 25938 22703138 ~ 22737767 (+) True atp6v1h
XM_034303662.1 mRNA downstream 26198 22703398 ~ 22737767 (+) False atp6v1h
XR_004578015.1 other upstream 908188 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 641304 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1431595 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2181826 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3030627 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3220935 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile