RNA id: XM_026935918.2


Basic Information

Item Value
RNA id XM_026935918.2
length 2403
RNA type mRNA
GC content 0.47
exon number 9
gene id bcl6ab
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27421285 ~ 27426694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCCGGTGGTGGAATTCCGAGAAGTGAGAGCTGAGCCTTCACAGAAGTTCAGATTCCAGGAACTGCTGAAGGACGGATTTCTAAGAAAAACATACCAGAGTGTTAGCATGAGCAGCGCAGCAGACGGCTGCATCCAGTTCACCCGGCATGCAGGTGACGTGCTGTTCAACTTCAACCGCCTGCGCAGCCGAAATATCCTCACTGACGTCACCGTGCGGGTCGGGGGCCGAGAGTTTCACGCACACAAGACCGTCCTCATGGCCTGCAGTGGCTTCTTTTACACCATCTTCATCAACACCCACAAAACCGAACCAGCGGTGGTTAGCTTGGACACTAAGGCCGACCCTGAAGGCTTTGCCATCCTGCTGGAGTTCATGTACACTTCCTGCCTAACCCTAAAAGAGCGCTTCATCGTGGCCACGCTCAACACGGCCATCTACCTGCAGATGGAACACATGGTGGAAACCTGCCAGCGCTTCATGGAGTCCAGGGGTTTGAGTGTGAAGCAGCTGCAAGGGGAACCACCAGCTGGCTCCGCCCTTTTACCTCAGGACATGCCCGTTGACCTCCGTGACCTCACTCCTCCTGCAGTGCACTATGCAGTCAGCACTTCTCCTAGCAACCTGACTAGCATCTACAGCCACCTTCCTCCTCGCCCTCTTCCGACGGGTTCCGTCTCAAACGCCAAACTGCTTCCCTGGGAAATTCCGAAAGACAGCCAAGCCGTAACTCACGGGCTAGGTTCCAATCCAGGAGGAAGTCGAGGCAAGCATTTGAGTATGGACCCTGCCATCCATCTGGATCGGAGTGCGAAAATGGAGGAAGCTGAGGTAGAGAACTCTCCTCACATGGTCAATCCTCGCAGCCCTCTGAAGTCGGACTGCCAGCCGAATTCTCCAGCTGAGTCGAGCGGCTGCAGTCGAGAAGCCGCGTCTCCTCCGAAAGTGCGCAACTGGAAGAAGTACAAGTTTATCGTGCTCAACTCGGCTGAAGGAGATGAGAATCCGCTCTGGAATTCCAACCGATCCATGGAGAAATGCAGCGAGACAGCGACGAAGCAGACGCCTGTGTCCATGTCCATCCACGCTGTGAGACAGGAGAGCAATGTGAACAGCGCCGAGACGAAGACTGAGAGCAGTGATCTAACCTGCAGTGAATGGGACAAAATGGAGAATGATTCCGAGAACCATCAGTGTCTCCATGACGCCAAACCGTACGACTGTGACCTTCACAGAACCTCCTTCACCTCCAACCACAACCTCGCTAACCACAAATCTGTCTCTCCAGGTGAGAAGCCGTAccgctgcagtgtgtgtggcgCTCAGTTCAACCGGCCGGCCAACCTGAAGACTCACCTGCGCATCCACTCGGGCGAGAAACCGTACAAGTGCGAGACGTGTGGCTCCGCCTTCGTCCAGGTGGCTCACCTGCGTGCTCACGTGCTGATCCACACCGGCGAGAAACCTTACTGCTGCTCCGTGTGCAACACGCGCTTCCGCCATCTACAGACGCTCAAAAGTCACCTGCGCATCCACACTGGCGAGAAGCCCTACCACTGTGAGAATTGTGATCTACGTTTTAGACATAAGAGTCAGCTCCGCTTGCACCTGAGACAGAAACACGGCGCCGTGACCAACATCAAGATCTCCAACCGCTGAAACACTGAcacagcaatacacacacacacacacacactcaaatacagtGGTACATGTACTGTGGTGTTTAAATGTCTGAGTCCACTACCAATCACTTATCACAAAACTAACATAAGATTATAATTCACAATATCTGTATATAATATGACTGTGGGGAAAtactccaatctgattggtccgtCGAGGTATTCAGGCGTGTGTTGTATTTCTAAACCTGAGCCGTTCACTGTATGTAAGTCGGCTCCCGTTGCTTTAAACGCAAATGTTTCTTTAACACTGGAATGCAGATAAGCGCTGACTCTATTTActttaaattagctagctaattttgtacaagtataaaatatatagacaaaaaaagatattacttaaattataaaaatatttaaattgctGAATAGTCTAATATAACTTATAGAGCACTTATCAGTATTATGTCTTAGTTAATGTTTGATAAGTGATTGGTAGTACcctcagacttttttttttttttgcattttttttgcatttttctcaaGTATACAGTCATATAATGGATaagaatgtttatgtttatatgatattataaaGAACAGTTATTTTTGCACTTGTTGAACATGGTACATACGAGGTActtaaaaaattacatgaatATATAtccaaaaaaatttatttatagatgttTTATAGCTTTTTATGTACAGCATTTTGATATGAAAATAAGTGGAGATGGAtgttgtaataaaatatttcagataaaatgtt

Function

GO: NA

KEGG:

id description
K09231 KR; krueppel

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85334 lncRNA upstream 14887 27405579 ~ 27406398 (+) False sgip1b
TU85328 lncRNA upstream 40213 27380848 ~ 27381072 (+) True G71980
TU85325 lncRNA upstream 49607 27371473 ~ 27371678 (+) True G71977
TU85279 lncRNA upstream 125921 27293356 ~ 27295364 (+) True G71942
TU85275 lncRNA upstream 131580 27287173 ~ 27289705 (+) True G71939
TU85353 lncRNA downstream 1725 27428419 ~ 27429222 (+) True G72005
TU85362 lncRNA downstream 32976 27459670 ~ 27460197 (+) True G72012
XR_003404004.2 lncRNA downstream 57126 27483820 ~ 27487711 (+) True LOC113540179
XR_003404003.2 lncRNA downstream 57137 27483831 ~ 27487711 (+) False LOC113540179
TU85494 lncRNA downstream 126433 27553127 ~ 27555706 (+) True G72118
XM_026937130.2 mRNA upstream 8505 27410223 ~ 27412780 (+) True tctex1d1
XM_034304151.1 mRNA upstream 15475 27384807 ~ 27405810 (+) True sgip1b
XM_026936528.2 mRNA downstream 14815 27441509 ~ 27447248 (+) True fam78ba
XM_026937314.2 mRNA downstream 33574 27460268 ~ 27466505 (+) True imp3
XM_026936474.2 mRNA downstream 41354 27468048 ~ 27477673 (+) False zgc:55943
XM_034303667.1 mRNA downstream 41589 27468283 ~ 27477673 (+) True zgc:55943
XM_026936475.2 mRNA downstream 41589 27468283 ~ 27477673 (+) False zgc:55943
XR_003404108.2 other upstream 308031 27113148 ~ 27113254 (+) True LOC113540738
XR_003404105.1 other upstream 757203 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 1045506 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 1057052 26353189 ~ 26364233 (+) False LOC117597079
XR_003404060.2 other upstream 1128501 26288294 ~ 26292784 (+) False zgc:66427
trnat-ugu_5 other downstream 62559 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 129823 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 131071 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 193911 27620605 ~ 27620677 (+) True trnat-ugu_6
trnat-ugu_8 other downstream 194617 27621311 ~ 27621383 (+) True trnat-ugu_8

Expression Profile