RNA id: XR_003403979.2


Basic Information

Item Value
RNA id XR_003403979.2
length 2375
RNA type misc_RNA
GC content 0.47
exon number 23
gene id kif2c
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24859026 ~ 24871263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGTACTTCCGGTTAGATGAACAACTTCCGCTGACGTATTTTGAAAGCTTGGCGGTTGAGAAGTTTTTTGTACATACGACAGGCTTGTTGTGTTGCGCTGGCTGAAGGattgggttttatttttatttttaaaagcttgTGTTTATATTAAGTAGGGTAAAATGGACCCAGCAGCTGCGACGCTTCTTGTTGGACTTGCTGTCAAAATTAGCCGCAGTGACGggagagttcacagtgcaacagtgaaaACTGTCAATGCTGCCAAGTCGACAGTACATGTGGAGTGGAATGAGAAAGAAGTGACTAAAGGAAAAGAGATTGACCTGAGTGACATCTGTCGTCTCAATGCTGACCTGCTCGAATATCTGCAAGCATCAAACCAAGCAGGACCTTCCACCGCTCCAGCTGCCAACCCTGCACGTGCGCCTAAAGCGGACAAAaaatcaGAGCAACCTACAAAGTCATCAAAGATACCTGCCCCTTCAGAGTTGGCCCCTCCAGCTGGTCCGTCTGAGGAGCCAGTCCCCAGAAGGATGACCACTCGCCAGACTTGTCTGTTTCGACCACCAACCATTCCATCTGCTGGTTTGACTCCTGCTGATGATGCTCCCAGTCAGGAGCAGCCCTCGTCTACTATCCCTAGACCCTCAGGATTACCAAGTTATCCGAGAAGACAAGTTGCTAAACCCCCATCTCCTCTGCTTCCTGCCATTGAAGCTGTGTCAGAAAGTGAGGCCTCAAAATGTGCTCCTGCACCCACTGCAAACCAGCGCCTTTCACGAGTTCCAGAAGTAAATAAGACAACAAACAAAAGGCTGTCCGTGTCGACTAAAAACCCAGAAACCCAGTCCAAGAAAGGAAAGTATGGAGATATGAACCGCCCCAACAAGCAGTTTTACCAGATGATAGAAGAATATCGAGAGACTGTGGAGAAAGTTCCATTGTCTTTGAGTGATCCTGTTGAGCTTCAccgaatctgtgtgtgtgttcgcaaGCGGCCACTAAATAAAAAAGAAATAGCTAAGAAAGAGATTGATGTGGTGACGATCCCTGGAAACGGAGTCCTCCTGTTCCATGAACCCAAGCAGAAAGTCGATCTCACAAAGTACCTTGACAACCAGCCTTTCCACTTTGATTACTCATTTGACGAAGATGCCAGCAATGATTTAGTTTACAGATTCACTGCCAAACCTCTGGTTAAGACTATATTTGAGGGTGGAAGGGCGACATGTTTTGCATATGGTCAGACTGGGAGCGGAAAGACACATACAATGGGTGGAGACTTTTCAGGAAAGGCTCAGAATAGCTCTAAAGGAATCTATGCCTTGGCAGCACAGGATGTGTTTACCCTTCTGCAGCAGAAAAGATATGCCGACCTATGCCCATACGTGACCTTTTTTGAGATCTACAATGGCAAGGTCTTTGACTTGCTGAATAAGAAGGCAAAACTGCGTGTGCTAGAGGATGAAAACCAACAGGTGCAGGTTGTTGGCCTGCAGGAAATGCCTGTCTCATCTGTTGAAGATGTCATAAAGATGATTGAGAAGGGGAGTGCATGCAGAACATCTGGCCAGACGTTTGCCAATGCCAACTCGTCCCGGTCCCATGCCGTCCTGCAGGTTATCCTGAGACGGCATAAGCTGCTTCATGGGAAGTTCTCTCTGGTGGACCTGGCAGGGAATGAGCGGGGCACAGATGTCAGCAGCAATGACCGGCAGACTATGGTGGAGACAGCAGAGATCAATCGCAGTCTTCTGGCATTGAAGGAATGCATCCGATCTCTGGGGCAGAACAGTGAACACATCCCCTTCCGGATGAGCAAGCTCACCCAGGTGCTCCGAGACTCCTTCATAGGCGAGAACTCCAGAACCTGCATGATTGCCATGATCTCACCTGGTATGACCTCTTGTGATtacactctgaacacactacGTTATGCAGACAGGGTGAAGGAGTTGAATGGATTGTCTAAGGGAGCTGCACAGAACACTAAGCTAACAGAGGAGTCAGAGGAGGGCAGCAGTTCCTTAGAGGAGGAGGGTATTCCTGCAGAACTTGAAGTCATGGCCCAGTTCTCTGAAGTGGAGGAGAGGTTCTATGAAGATCTGCAGGGTGGCAGTGAAATTGCCAGAGCGATGGAGCACACATCATATGACATTATAAGCGGTCTACCAGAAATCGATGCATACATGGAAAGACTTCAAGGATCTTACCATGCTCTGCGATCAGCTATTGAGGCACTAAAAGCCAGGTCACCCAATCTGGCATGACATGcaaatggagtggaaaaacCAAATCAAGTAATTTGGTTCTTTTGAATGCTGACTGCTAATGTTCTGTGTTAACACGTTCCCTTGGTGaggaataaaattata

Function

GO:

id name namespace
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83566 lncRNA upstream 9539 24839247 ~ 24849487 (+) True LOC113540553
XR_003404038.2 lncRNA upstream 12305 24839221 ~ 24846721 (+) False LOC113540553
TU83567 lncRNA upstream 12305 24839247 ~ 24846721 (+) False LOC113540553
TU83289 lncRNA upstream 109113 24681981 ~ 24749913 (+) True G70204
TU83226 lncRNA upstream 273119 24585427 ~ 24585907 (+) True G70142
TU83637 lncRNA downstream 126653 24997916 ~ 24998225 (+) True G70520
XR_004578007.1 lncRNA downstream 456955 25328218 ~ 25330540 (+) True LOC117597084
TU83828 lncRNA downstream 685574 25556837 ~ 25557761 (+) True G70695
TU83897 lncRNA downstream 687164 25558427 ~ 25561346 (+) True G70763
TU83912 lncRNA downstream 714063 25585326 ~ 25585534 (+) True G70778
XM_026936109.2 mRNA upstream 51622 24792295 ~ 24807404 (+) True kiss1ra
XM_026936117.2 mRNA upstream 261917 24587207 ~ 24597109 (+) True zgc:113531
XM_026936540.2 mRNA upstream 297748 24507205 ~ 24561278 (+) True slc6a9
XM_034303740.1 mRNA upstream 297748 24509347 ~ 24561278 (+) False slc6a9
XM_026936539.2 mRNA upstream 297748 24534919 ~ 24561278 (+) False slc6a9
XM_026937276.2 mRNA downstream 123614 24994877 ~ 25013306 (+) True klhl20
XM_026937138.2 mRNA downstream 150350 25021613 ~ 25047317 (+) True dars2
XM_026936668.2 mRNA downstream 398959 25270222 ~ 25552839 (+) True astn1
XM_026936669.2 mRNA downstream 398959 25270222 ~ 25552839 (+) False astn1
XM_026936671.2 mRNA downstream 398960 25270223 ~ 25552839 (+) False astn1
TU83028 other upstream 749137 24108795 ~ 24109889 (+) True G69971
TU82445 other upstream 1538683 23318504 ~ 23320343 (+) True G69509
XR_004578017.1 other upstream 3096725 21754018 ~ 21762301 (+) False LOC113540377
XR_003404013.2 other downstream 836564 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 1026872 25898135 ~ 25901843 (+) False LOC113539772
TU84572 other downstream 1357501 26228764 ~ 26229191 (+) True G71385
XR_003404061.2 other downstream 1417027 26288290 ~ 26292784 (+) True zgc:66427
XR_003404062.2 other downstream 1417027 26288290 ~ 26292784 (+) False zgc:66427

Expression Profile