RNA id: XM_026935935.2


Basic Information

Item Value
RNA id XM_026935935.2
length 1795
RNA type mRNA
GC content 0.47
exon number 6
gene id b3gat3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16746698 ~ 16750124 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCAATGAATGTTGCACCGCAGCGGAAACTGCTGGAGCTGTTTGAAATGGATTTTAATACAATGAACGGTTGTTCTTGGATACGGACGCTTCATCGCTGACTTTGTATATAAACGACTATGTCGCTTAGGCGAATTAAACAGAAATCGCAAAGTCTTTCTACTGCCTGGTCTGGCCTGGATTGATGATGTCGATGGCAGGCTGCTGTCAATAAGCTGGTTGCATTCAAAGGAAAGGCTTGTGTGTCCTGGGCTGTAAGGTGAAGTTCACCACCCACTCTGTTTTTGGTGTCACCTCTATACAATGAGAATGAAGCTCAAACTGAAGACTGTATTCCTGCTCTACTTTATGGTCTCCGTACTGGGCCTCATCTATGCCCTCATGCAGTTAGgccAGCGCTGTGACTGCAGAGAACATGACTTGCCTAAGGACCGAACCATCTCCCAGTTGAGAGGGGAGTTACATAAGCTgcaagaacaaataaaaaaatcagaggcATCAAAAGCCTCCAGGCAGTCTAATTTGCCTACAATCTATGTAATAACACCTACCTATGCAAGACTGGTGCAGAAGGCTGAGCTCACACGCTTGTCCCACACTTTTCTGCATGTACCTCAGCTCCACTGGATCGTGGTGGAGGATTCTCCCAGCCCAACCCAGCTAGTGagtaactttctggctgattcTGGACTGACCTACACTCACCTACACATGCTGACGCCTAAAGACCGGAAACTGCAGGAAGGTGACCCTCACTGGCTGAAGCCTCGTGGGGCTGAGCAGAGGAACGAGGGTTTGCGCTGGCTCAGGCAGAAGGCTGCTGCTGACGGGGGGAAAGGGTTAGCCTTCGACAGTGCTGTAATCTACTTTGCTGATGATGACAACACATATAGTCTGCAGCTCTTTGAGGAGatgCGTTACACTAAGAAAGTCTCCGTTTGGCCGGTGGGTCTGGTGGGGGCTATGAAGTTTGAGCGGCCTGTGGTGGAGAATGGGAAGGTGGTTCGGTTCCACACCGGCTGGCGACCCAACCGTCCCTTCCCCATTGACATGGCTGGCTTTGCTGTCTCCCTGAACCTGGTGTTGGCCAATCCTGAGGCTTGGTTTGATGGCAATGCAGAGATGGGCTTCCTGGAAAGCAGCTTCCTGCAGAACCTGGTTACTATGGAGGAGCTGGAGCCCAAAGCTGACATGTGCACTAAGGTGCTGGTGTGGCACACACGCACTGAAAAGCCAAAGATGAAAAGGGAGGAGGCTCTTATAAAGCAGGGGTTAGGATCAGATCCCAACGTGGAGGTATAAGCTctaagaacactctccaggaacAACCTGGTACATCCCAgttacaaaaacacattttgctgTAGTGTTAAACTGAGAACATTCTTCTTTCTTCAGTATGGGAGGTCCGTTTACTGTTGTCCAGGAATCATGACACTGTATGAATAACTGGATGGTTATCATAATTgggtgtatgtatttgtgtgcatgAATGAATGCAGTTTTCTATTTATATGTCTATTTATCATTCATGGTATTATGTAGAACACATGTAGATGGTCCATGTTTCTGCTTCATGCTTGTAAATGTTTGTCTTgtacaaaaacatgttattGCTATGATCAGGGagacaataaaaaaagtaattctgGGGTGGGGATGATTCCAAAGGGCCGGAGTTAGCAAGAGAAGCCAAGTGGTTCAATGGAACTATAGGGAACCAAAATCACCAAAAATTGTACTAGGTATATGCATCTTTCAAAAATGGcttaaaataaaagacattttacacaaa

Function

GO:

id name namespace
GO:0050650 chondroitin sulfate proteoglycan biosynthetic process biological_process
GO:0051216 cartilage development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity molecular_function

KEGG:

id description
K10158 B3GAT3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77740 lncRNA upstream 17346 16723895 ~ 16729352 (+) True G65644
TU77739 lncRNA upstream 69332 16676529 ~ 16677366 (+) True G65643
TU77679 lncRNA upstream 152241 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 168961 16569687 ~ 16577737 (+) True G65580
TU77609 lncRNA upstream 231857 16514637 ~ 16514841 (+) True G65542
TU77752 lncRNA downstream 1736 16751860 ~ 16752090 (+) True G65654
XR_003403984.2 lncRNA downstream 8103 16758227 ~ 16762011 (+) False LOC113539905
TU77754 lncRNA downstream 8136 16758260 ~ 16763461 (+) False LOC113539905
TU77755 lncRNA downstream 8136 16758260 ~ 16763461 (+) False LOC113539905
TU77756 lncRNA downstream 8136 16758260 ~ 16763461 (+) True LOC113539905
XM_026937065.2 mRNA upstream 1341 16736078 ~ 16745357 (+) True naa40
XM_026937064.2 mRNA upstream 3445 16736067 ~ 16743253 (+) False naa40
XM_034303619.1 mRNA upstream 3447 16736070 ~ 16743251 (+) False naa40
XM_034303753.1 mRNA upstream 31601 16675435 ~ 16715097 (+) False mark2b
XM_026936987.2 mRNA downstream 2013 16752137 ~ 16755407 (+) False sb:cb1058
XM_026936986.2 mRNA downstream 2696 16752820 ~ 16755407 (+) True sb:cb1058
XM_026937051.2 mRNA downstream 22275 16772399 ~ 16776829 (+) True batf2
XM_026937052.2 mRNA downstream 22275 16772399 ~ 16776829 (+) False batf2
XM_026937161.2 mRNA downstream 26770 16776894 ~ 16804016 (+) True ppp2r5b
XR_003404046.2 other upstream 376014 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 427532 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 706714 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 2087762 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2477358 14255744 ~ 14269340 (+) False brms1
XR_003404110.1 other downstream 10395 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 10625 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 10857 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 11142 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 11448 16761572 ~ 16761647 (+) True LOC113540744

Expression Profile