RNA id: XM_026935954.2


Basic Information

Item Value
RNA id XM_026935954.2
length 2268
RNA type mRNA
GC content 0.44
exon number 11
gene id zgc:92429
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11707459 ~ 11716739 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTATTATAACTAATTTGTAAGACAATTAACggtgttttcttcacttttAGATGTTCATATTGTTCCTTTGAGATACTTGTTCATCTTTTTGCTCTGACATAGAAGCAGTGATCCCCAATATGATGATATCTTTTCACAGTTCTGTCAGACTCTTCCactttatcaaaataaaatgtaatgctttttaattcttttaaataatgaaattactTAAATACCTTTTCTCAGTCTGTGCTCCTGctctgtgtcagtgtgaggTGCTCAGCTCTCCTGCTCCGGATATCAGGAATGTCAGCCTCTTCAGATAAAACCCAACAGCTGCAAGCCTCCTGACTATTTATAACTTTCATTCAggctgtcctctctctctctctggctctctctctctctctctctctctctctctctctctctctctctctctctctctcttctctctctctctcttctcacgTTTCTTgtcctctctctgcctctctgatTTCTGTCGCTTTTCTGGATCACTCCTTCTTCATAACTGAAAGTTCTGGAGAGTGAAGAAGGCAACAGGAGGAGTGTTTAAGAGTCTGTGACAAACCAGGAGAGGACCAGAAGAACAACTGTTTAATAAAAGAGGAGTTCTGAAAAGAAACTAAGTGCAAATCAGACCAGAATGGCTTCGCTGTGTTATAACAGAGGCTGTGGCGAAAGGTTTGATGAGGATAAGAACTCGGATGATGCCTGTTGTTTTCACCCTGGAGTGCCTATCTTCCACGATGCCCTGAAGGGCTGGTCCTGCTGTAAGAAGAGAACGACCGACTTCTCAGAGTTTCTCTCAATCAAGGGTTGTTCCTGTGGACGCCACAGTAATGTGAAGCCTGAAGAACCGCTGAAGCCAGAGTTTAAGTCTGAAAAAGGAGAGCAGAAGCCCAACAACAGCAAGGAGATCATCTACCAGGGCCCTAAATCTGCTGAGGctctggagaaagagagacccagCTCTGATGAGCCGATGTCCAAGCTGAAAGTGAAGGTGTCTCCTTCTCTGGCTCAGATcctggagaaaatggagaacaGTGAGAGGGAGAAGCAGGAGAAGCTCGAGAGCCGAGGTGTCATCGTGGggacaaaatgcaaaaactcAGGATGCAAAACAattTACCAGGGTCCAGAGACAGATGCTGAGGTTTGCACATATCACCCTGGAGCACCAGTCTTTCATGAGGGATACAAATACTGGAGCTGCTGCTGCATAAAGACCATCGACTTTAACGCTTTCCTGGATCAAAAGGGCTGTACTACAGGCAAACACTGCTGGGTCCAGAAACAGGATAAGAAGAAGGTGGCATGTCGACATGACTGGCACCAGACGGGCAACCAGGTGGTGGTCACCATCTATGCCAAGAACGCCAACCCTGAGCAGTCCTATGTGGAGGCCAACCGCACAGTGCTGACGTGTCATATTCAGTTTGAGAACAACAAGGAGTTTCACAAGGACTTCCATCTGTGGGGGGTAGTTGATGTGAAGAGCAGCTTGGTGAACATGGTGCCTTCTAAAGTAGAAGTGACCTTAAAGAAGGCCGACGCTGTAGCGTGGGGTAAACTGGAGGACTCCAAACACAAACCTGAACCTGAGGTCACAGAAGACAGCACCACAGAGCAGGAGACGAAAGCAGATGAAAAACCGGATTGGTACATCTCAGATGATGACATCAGTGAGTCAGActgggaggaggaggacgacAATAATGACGATAAGAAAGGGGAAGAGCAGGATGTGGACGGTCCCCCCTTGCTGGAGGAACCCAAAGCTGTACCTCCAAAGCAATAGAGGCCGATTAATATTCACATAGAGATTGTTTTTATACAGTGTGACAGTAGGGGTTGGATGGGCATGATGGTGTATTGTGAAAAGTTAGTTTGAATTAATTACATGGTTATCATTGCAATATAATGATCCAAATAATGATTTAAACAAATTATTCTCAGGTACtgcacatttctgcatttttttaaaagatgatgGTCACCAAAAATACCataactgtacattttttaaattttccgaGCCACCCAGGAGTTGGTTAtggttcctataacagcacgttctgaagtggtttattcctcatataccagagcaatttgccaactattacaattattatttcttaatgGACGTTGTCATGTATTTTATCCCGATACTTGCATTTAAAATTCTTGAATGCCAAAGAggcaagttacttcctgttttcacttacattgtaacaactataaacagtcgttccatca

Function

GO: NA

KEGG:

id description
K13458 RAR1; disease resistance protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74260 lncRNA upstream 2197 11655467 ~ 11705262 (+) False si:ch211-200p22.4
TU74270 lncRNA upstream 31764 11675313 ~ 11675695 (+) True G62654
TU74256 lncRNA upstream 96402 11610836 ~ 11611057 (+) True G62640
TU74255 lncRNA upstream 98190 11608756 ~ 11609269 (+) True G62639
TU74121 lncRNA upstream 102229 11590726 ~ 11605230 (+) False LOC117596972
TU74587 lncRNA downstream 145894 11862633 ~ 11863683 (+) True G62932
TU74622 lncRNA downstream 196111 11912850 ~ 11913106 (+) True G62967
TU74638 lncRNA downstream 218090 11934829 ~ 11937759 (+) True G62983
TU74720 lncRNA downstream 287251 12003990 ~ 12004223 (+) True G63061
TU74814 lncRNA downstream 531924 12248663 ~ 12249788 (+) True G63137
XM_034304104.1 mRNA upstream 2123 11644902 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304101.1 mRNA upstream 2123 11644903 ~ 11705336 (+) True si:ch211-200p22.4
XM_026935951.2 mRNA upstream 2123 11644903 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304103.1 mRNA upstream 2123 11644903 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304105.1 mRNA upstream 14862 11644901 ~ 11692597 (+) False si:ch211-200p22.4
XM_026936200.2 mRNA downstream 102027 11818766 ~ 11824148 (+) True gpr185b
XM_026935824.2 mRNA downstream 369440 12086179 ~ 12093053 (+) True si:dkey-171c9.3
XM_026936836.2 mRNA downstream 383066 12099805 ~ 12122603 (+) True tnfsf10l
XM_034303321.1 mRNA downstream 481603 12198342 ~ 12206875 (+) True tifa
XM_034303320.1 mRNA downstream 482630 12199369 ~ 12206875 (+) False tifa
XR_003403980.2 other upstream 10164 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 1044052 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1141735 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1175931 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1176415 10530971 ~ 10531044 (+) True trnan-guu_13
TU74787 other downstream 575775 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1701638 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1754030 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1841884 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 1988837 13705576 ~ 13719454 (+) False gc2

Expression Profile