RNA id: XM_026935959.2


Basic Information

Item Value
RNA id XM_026935959.2
length 2934
RNA type mRNA
GC content 0.44
exon number 6
gene id kcnj10a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9391003 ~ 9412913 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gagttggtgGAGGAAAAGCAGAATTAATGAGTAGAAGAGGTGCTGAGATGGTGAAAACGGGACGGATTTCCATCTCCAATTTGAAACAGTTTGTTTAGAGCCGGAAAGAAACTTCCCGAGAAGTTCAACTACCTgaggacaaacagagagagagagagagagagagagagagagaaagacagacagacagagagagagagagagagagagagagagagagagagagagagacccggTGCATAATAAATCCGTATCATCATCCAACCAGCAGCGGCACCGACTGACACTCGGCTCTGACTCCATCCACTAACCAAACTTCTGCAAACTTTGAAACTTTAAGTTTTTCTGTACAACTATGAGTTTTCTAATTTAACAAAAGATGAAGAGGAAGCGTTAATATTGTTCTAAAGTGGCTTATTTTTGCAGCCTGTGTGGACATGCTGTCTCTGTCAGCTCTTCTCGGCCTCAAACTGCGCTCGGATGTCTCTTCATTCTGACAAACTGGagtagaaacaaacaaacaagcaaacaaacaaacaacaaaacaatttaCGCCTTCACAAACCTGCGATCAAGTAAATCATAAGCCATGACTTCCTccactcctccctcctctcGTAGTCCTTCTCCCCAAAAGGTGTGCCATTCCCAGACTCAGACGGATGTCCTGAAGCCGCTGCTGGGcggaggtggtggaggtgtgGCAGGAGGTGGAGCTGCAGCATTGAGGAGGCGTCGGCGTGTCTTGTCTAAGGATGGCCGAAGCAATGTGCGCATTGAGCATGTCAGTGGCCGTGGCGCTCTCTACCTGCGTGACCTGTGGACCACCTTTCTGGACATGCAGTGGCGCTACAAGCTTTTCCTATTCTCCGCCACCTTTGCTGGGACCTGGTTTGCTTTCGGTGTGCTGTGGTACCTGGTGGCGCTGGTGCACGGAGACCTGCTGGAGTTTGACCCGCCATCCAACCATACCCCCTGCGTGATGCAGGTCCAGACGCTGACTGGTgccttcctcttctctctggAATCACAGACTACAATTGGCTACGGCTTCCGGTGCATCACAGAGGAATGTCCAGTCGCCATCATCCTTCTCATAGTGCAGCTAGTTATCACAATGGTGATGGAGATCTTCATCACAGGGACCTTTCTTGCCAAGGTGGCTCGGCCGAAAAAGCGTGGTGAAACAGTAAAGTTCAGTCAGCATGCAGTCGTGGCCAATCATGAGGGCCAACCATGCCTTATGATCCGTGTAGCCAACATGCGCAAGAGCCTGCTGCTGGGCTGTCAAGTAACTGGTAAGCTGCTGCAGACGTCTCTGACTAAAGAGGGTGAGACAGTCCGGCTAGACCAGAGGAATGTGGCCTTCCAGGTGGACACGTCCAGTGACAGTCCCTTCCTCATCCTCCCTCTCACCTTCTACCATATCATTGATGACAGCAGCCCGCTCCGCCCTTGGGCTGCCAAGGGTGGAGGTTGGGCAGACCCAGAAATGGCAGATTTTGAACTGCTGGTAATAATGAGTGCCACAGTGGAGCCCACATCAGCCACGTGCCAGGTACGAACCTCCTACCTGCCCGATGAAATCCTGTGGGGCTACGAATTCCCCCCTGTCGTCTCGCTCTCCCCATCAGGGAAATACGTGGCTGACTTCGCCTTCTTCGACAAGGTAGCTAAGACCAAGACCCTGCCATGCTTTACGCAAACCTCCCCTTCTAGCCCAGGCTCAGACAGTGGgcgaagaggaggaggaggaaaggatCCGGAGAAGATGAGGCTGGAGGAGAGCTACAGGGAGGAGAAGGGGCGTGATAGAGGGAGGATACGAGATAGCAGCCCACTTAGCGTCCGCATTAGTAatgtttagagagagagagagaaagagagacagacagacagacagacagacttgttgagagaaagagaatcaGACTAACCATAAGCTACTAGAAGCAGAGGAATCTAAGAAGTTCACAATAAATCCTCTTCAGaagacacatttttcaaatatacacatacactggGACTGCTACGTGTGAACAATGGTATCACCATCTTGTGGCTAAAATTAATAGTCTCACCTGAACACTGGCCTTGTTTCAAtaatgtttgattttctttattgtacTTTCATTTTTATGGCTTGGACTATGacaagattataaaaaaaaatcaaaaggccaaaatatgcaaaaactgatttaaaatagTCATTAGATAATGAAGCACTGTACTGAAGGATCAGGGGTTCTATGTCCTGGGACTTGTCTTTGTATTCCATATTGATGGACTGAACTGGAATgatgttattattttgcatgtgtatatatttgtaccTAACAATGCCAGTTTGAGTACTCATTTGAgtatagatcttttttttttgagtatagGTTTTTTCTAGTCACTGGAGCAAACATATTGATGCAGTATGTTAACAATACTAAAAGCACTTTAACTCTGTAAGAAGATTTCTCTAGTTTCTGTTTTGAAAGCACAACTAACTAGTGAATATCGGATGGTGAATAACTGTCCTGTCATTTCAAGCATGTGTGGGTGTTTCTGTGAATCTGTAGCATGCCTGCTTGGCTTGCTGTAAGGTGTAGGGAAATGGAGGGcgtattttgaacaaaatatttttagaaatgtacaaaatttcTAGACCTacatagatattattattattattattattattattattattattattattattattattattattatcattattattattattattattattatgtgcgACATGGATGTGTTTTCTTCggtattaaaaacaaatgtggtCTGTCCTACTTGTgggaagaaaaatatttttattttaatatatgtgATAGAGCTCAGTTTTAAAAACTGGGAAATTATCACTTTAACGTCTAATGCCTTTAAAtgaccatttttaataaatgatatgTC

Function

GO: NA

KEGG:

id description
K05003 KCNJ10, KIR4.1; potassium inwardly-rectifying channel subfamily J member 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72863 lncRNA downstream 77984 9312797 ~ 9313019 (-) True G61518
TU72841 lncRNA downstream 231888 9151418 ~ 9159115 (-) True G61496
TU72836 lncRNA downstream 265695 9120761 ~ 9125308 (-) True G61492
XR_004578045.1 lncRNA downstream 281038 9107528 ~ 9109965 (-) True LOC117597152
TU72833 lncRNA downstream 294129 9088707 ~ 9096874 (-) True G61489
TU73304 lncRNA upstream 15881 9428794 ~ 9430832 (-) True G61876
TU73311 lncRNA upstream 35602 9448515 ~ 9454706 (-) True G61881
XR_004578142.1 lncRNA upstream 86806 9499719 ~ 9499931 (-) True LOC117597234
XR_004578141.1 lncRNA upstream 90149 9503062 ~ 9503274 (-) True LOC117597233
XR_004578120.1 lncRNA upstream 93531 9506444 ~ 9506654 (-) True LOC117597212
XM_026936209.2 mRNA downstream 1522 9383985 ~ 9389481 (-) False LOC113540032
XM_026936210.2 mRNA downstream 2904 9383985 ~ 9388099 (-) True LOC113540032
XM_034303893.1 mRNA downstream 13991 9368722 ~ 9377012 (-) True LOC117597149
XM_034303892.1 mRNA downstream 13991 9370664 ~ 9377012 (-) False LOC117597149
XM_026936304.2 mRNA downstream 63572 9314849 ~ 9327431 (-) True LOC113540087
XM_026937205.2 mRNA upstream 22221 9435134 ~ 9437967 (-) True dusp19b
XM_026937206.2 mRNA upstream 22221 9435134 ~ 9437964 (-) False dusp19b
XM_034303882.1 mRNA upstream 26437 9439350 ~ 9571463 (-) True capn1
XM_034303883.1 mRNA upstream 26437 9439350 ~ 9565351 (-) False capn1
XM_034303879.1 mRNA upstream 61264 9474177 ~ 9484601 (-) False LOC113539885
TU72884 other downstream 52258 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 63572 9314849 ~ 9327431 (-) False LOC113540087
TU72820 other downstream 406550 8983234 ~ 8984453 (-) True G61478
XR_004578041.1 other downstream 812153 8575506 ~ 8578850 (-) False LOC113526753
TU71817 other downstream 2491776 6882469 ~ 6899227 (-) False LOC117597002
TU73323 other upstream 113661 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 363365 9776278 ~ 9805318 (-) True G61972
TU73337 other upstream 615074 10027987 ~ 10037575 (-) False G61900
trnan-guu other upstream 1061483 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 1062710 10475623 ~ 10475696 (-) True trnan-guu_1

Expression Profile