RNA id: XM_026935961.2


Basic Information

Item Value
RNA id XM_026935961.2
length 6749
RNA type mRNA
GC content 0.46
exon number 4
gene id si:ch73-335l21.1
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13328033 ~ 13375050 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTAACTAGGGGGACGGGCGATGAGTGACAGGCCGCGCAGTAGCAGCAGATGAGATGTAGGCTATCCTACTGTACACTAATGCGATTTAGCCACTCCAGGCTTTCTCCCAGCTTTACACACTTTGATGAGCCGTTTGGCTGATGACATCTTTTTCCCCCCTGAAACAAGAGGACACATTGTGGAAGCAGCCGCATGAGCGAGTCTCAGCCGCCTGCGCGTGCACGACGACCGACTTTTCCGAAGAGGGACAGGAGAGAACCCCGTGGCCGTGAGCTagtttgaatgaatgaagacaGTGCAGGATTGAGAGAGCGCAATGGAGAGCGAGGCTCCGAGCTGCGAGGACGTGCGGAAGAGCGGCTACCTCCGCAAGCAGAAGTCCATGCACCGGCGCTACTTCGTGCTGCGCGCGGCCTCGGAGCGTGGTCCGGCCCGCCTTGAGTACTACGAGAGCGAGAAGAAGTTCCGCGGCGGGAAAGCAGCGGCGCCCAAGCGGGCCCTCGCGCTCGAGACGTGCTTCAACATCAACAAGCGCGCCGACGCCAAGCACAAGCACATGATCGTGCTGTACACCCGCGCCGAGAGCTTCGCCGTGGCCGCAGACAGCGAGGCGGACCAGGACGAGTGGTACCGCGCACTGCTCGAGCTGCACTGCAAGAGTAAAGCACTGTGTGATGGTAATTCTGGAGATTATGGTGTGCCATCCCCTGGGCCTGCGTTCAAGGAGGTCTGGCAAGTAAAAGTTTGGCCGAAAGGTCTTGGACAAGCTAAAAACCTAGTGGGTATATACCGACTCTGCCTAACAGAGAAGACGGTCAACTTTGTCAAGCTCAACTCAGATGCAGCAGCTGTAGTATTACAGCTAATGAATGTGAGACGTTGTGGCCACTCTGAAAATTTCTTCTTTGTGGAGGTTGGCAGATCAGCAGTGACTGGCCCTGGAGAGTTTTGGATGCAGGTGGAGGATTCAGTCGTGGCACAGAACATGCACGAGACTCTACTTGAAGCCATGAAGGCCCTAAGTGAGGAGTTTCGCCAGCGCAGTAAGTCTCAATCTACTACAGCAGGAGGAGGGGGTGGTGCTACTGCATCTAATCCAATCAGTGTTCCATCTCGTCGCCACCACCCAAACCCTCCACCCAGCCAAGTGGGATTCATCAGACGACCTCGCACAGAGCCACCAGGGGCCACTGGAGGAGGTGGCACCAGCAACAATGCCTCCCCTACACCTCGGCATGGGTTTTCAAGAGCCTGTAACTCCAGTGATGGAGCAAAATTAGAGGAGGGCATGAATGCAGGGACAAAGGGTGTTAATTCCAGTTCAAGTCCCACTACAAATGGGTCTTGTTCTAGCACGCCCATTCTCAGGTCTACGTCTGTACGTGCTCCCACACCAGTTAAGGCACAGCATGCTCTGATGAGGTCAATCTCGACTCCAGCCCCTTCACCTGCCCAGAACCTCTCCTCCTACTCAGGCAATGGATCTGAATTTGGGGGCACAGGTCCTGGAACCACTGCAGCTGGCGGGGATGGAAATGGAAGCACTTACAATCGATTGCCTCTCCGCCAGCCCTCGGTTTCTGGTTCACTCAGCGACTATGGTTCTTCAGATGAATATGGTTCCAGCCCAGGTGAGCATTCTTTGCTGACTGCAACCATTCAGACAGGGTCTGTAGGTAGCTCAGGTGGGGATGAAGCTGCCAACTATATCCTTATGGCACAGAAAGGGGCATCCAATTCATTGCCAACTGACAACTCTCTGCCTCAGACTAGAAGGGTGTTGCGACGCTCTTCGGGTCGTGAATGTGACACTGAACGTAGGGTGATCAGTAAAAGGGCGTCTCTGCCACCCATGGCTCTTGAGAGACTTGGCACTTACCGCAGAGGAGGAGACGTAGAGATTGAGGAAGACAACTATGCTATAATGTCTCGAAGTACCAGCCGCGAGTCTTTCAGCTCACGCCAGGATTCAGAATCAACTGTTGTTGGAACCAGATATCTGGAAGTAGCTGCAGAGGCCAAAGCTGAAGCAGGAAGCTGTGGATCAGATGGATCAACTATTACTGGTAATGGTAATGTAGGGGGTGACAACGGATACATGTCCATGTTGCCAGGGGTAACAGCTCCTCCAGTGTCCCTCTCTCACTCGCTATCTGTAGCAGTGTCAGACTCTAAACCTGCAGATGACTACATGGCTATGACTCCTAACAATAGCATCTCACTTCCTCAGCAGATCCACCTTCCTACTTCTACCACAGATGGCTATATGATGATGTCACCAAATAGCAGCTGTTCCCCAGATCAGCGTGTGGTTTCAGGCACCTGGGTTGGCAGGAACAGTGCAGACAGTAGGCCTGGCAGTGATTATATGAACATGTCACCTATCAGTGTCCGTGCCAACAGCACTCCCTCTCCTCAAGGTTCTCTTAGAGCATCTGAAAAACATCCTCATCAACCTCCTCCCAAAATGGTATATTCTTACTATTCCCTTCCCCGTTCTTATAAACACAGCAGCCCTAAACACTTTGAAGATGGTTTAGGAAGAGGAAAGTGCCTGGGTAGTGAACGTGGAAATGGTGGTGGTCAAGGTCTTGGCAGTTGTAGGGGCACATCTCATTATCAAGAACCTGGAGTTGGACAACACTTgtctttttcctcctcctcataCTCATCCAGTTCAGCTAGCAGTGAAAGTCTGGGGGAGGGTGAAGAAAAGCTCACTCAGGTGAGAAAGACAGCTGCAGGAGCTAAAGTAAAGGATAGTGGGGCTCTGCAGCAGAGATTGGGCTCTGGGGCAGCTAAACAAGCACAGGGCCAGAGGAATCGTCCTCTTAGTTTGTTTGTGGATGTCTCTAAAGCCAATACCTTACCTAGGGTCCGGGAGACACCAGTCCCACCTGAACCTAAAAGTCCTGGTGAGTATGTCAGTATAGAGTTCAAGAGTGAGAGAAGCATCAGAGAAGTAGTTAGAGGACCTAGGGAGGGTGGTTCCATTCCTGCTAGCTCACAATGCCCCTTGCCTAGGCCCACTTCTTGTGTTGCTGGGTTCTTACCACATCCCTGCAGCCCCTCTTCTGCTGGTCCTCCATCTGTTGCTTCAGAATATGTCAACATGGAGCTAGGAGCCTCCCCTTCACCATCATCCTTCTCCCTCACTCCCCTTGGTTTCCCTTCTTTTCCCATTCCTCCAACCCCACCTACATCAGCACCTAAAGCTTGGGATGAGCAGACAGCAACACCACAAAATGAAGAGGCTGAAGGGGAAATGGTACATAGTGGGCATCAGCCTCTATCAGCCTCTCAGTCACTTGACTCTCCTATACCATGTGCAGACTACACAGAAATGGTTTTTGGATTGAGTACAGACACAACCACCAGCTCCACGACAGCTAAAGAATCACTGCTGGACAGACAAGAATCTATGGTTCCCACCCTAAGTCTGGGTCTTAATTTAGATTTTCCAATGTCCAAAGCCCCAAATCCGGATCATGGTGCTAAGGTAATAAGGGCAGACCCTCAAGCTCGGCGGCGCCACTGTTCTGAAACGTTCCTGGCCCCTTCTTCATTGTCCTCATGCCCCGTAAGTTCCTCTTCTTCTATGTGCATGATCAGTGAGCACACCCAAGCCATAGCTCGGCGACTTGGTTTAGATGGCATTTTGAGTGGCAGTGGAAACTTGCTAGATATCCCAAATCAGCATGCCAACCATGGATTAACTAACATAAATACTACCCAGACCTCATCTACAGAGCAAGGGCTCAACTACATAGACCTAGACTTGGCTACAAGAGAGAGCTCACATCTTGGTGTTGATGTTCAGACTACTGGCCAAACAGCAGCACGGctcttttcatctgttttgGGTAGTGGAGCATCTGGAGGTGCTGGAGGAACAGGAGGTCTGAGCAGCAATGCTTCAAATCTCAACACGTATGCTAGCATTGACTTCTACAAGTCAGAGGAACTACGTTCACACCAgggcagcaacagcagcaaagACAGTACAGGCACGGAAGACCTGTCAGAATCAATAATGGCGGAAGGCATTGCGTCGGCTCTTTTTAAGTaATGTTGAAGTATTGCCCTGGTCCTCTGGAATACTGAGGAATGAAGAGAGAGTCTGAGAGTTTTCctgcacacacagtgtgtgacaGTTTGACTGTTAGAAAACAAACAAGCGAAAAGAGGCGTGtatgcctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtctgcACAAGGTCCAGCTGCCTCTTTGGCACTTTGGAAAAAGACTGATAAACcattttgtctctgtttttaGTTTGACTTGTTGCAGCAACCAGTACGAGTGAGTGCCAAAAGAACTCTCCTTGCTGCCCAGATTGGTtttgtaacaaataaaaaccgcagccaatcagaggaCAGAATGAAAAACGCCTGCTGAGCGAGAGCCAATGAGGTCCGGCAATCAGGCGTGTGAACAGTTTGGCAAAAGGATTTGGTCAAACAGTGGAACTTGAGGATCACAATTCTTGAATTATGAATAGCTTGAAAGAAGTGCCTATTGTTATGATTGTAGTTATTTGAAAGAAGACTTGCAGCTTGATTTTGACTGAAGAACTGCTGGGAAGGCAAAATCACCAAGAAGAAGATGTGGTACTACAGTGTGAATTGTTCAGATGATGGTGAAGCTCTAAGAGTCTGTGCTGTGATGTTTAGTTAATCAGTATAGCAGCTTTACCATAAGCCTCAGTACTCCGGACTGTCTCACTACTGACTGTCTCTGTCGATTCCTTCTCACAAAACTGTCTACATATCTCACCTCTCCCAGTATCCTgattcttctctctttttgctTCATTCTTTgacattgtttctttttttttctgtgtctctttttatctcttgtCCTCTTTTTATGTGATTTAAATGTCCCAACTATGCAGTAGTACTTTAGTGCCTATCTGTAATTCTACACCTCTCTCACATTCTCGTTCAGCCTGTGCTCCTACGGTAGCATGTATCCCAGTGAGCTATTTTTATCTGTACTCTTAAGGTGGGGTGTTTCTCTGTGATGGTACCTGCTGTTACTTACCTCATGCATACACGCTAGCTGATCCAGTCCATGGTGGACTGTACAAATTATGTTTCAAATAGGAATGTGAATGACATTATCAATCTTAAGAGTTCTGTGGATGTCACCCTTTTTCACTGATTTCAGACCTTTGCTGGTTTTCTTACAGTAGTTATAATAAGGATCAGTGACTTGACATCAGTGTAAAAGGTAACATCTATGTGTAGCTTGAAATACCAGCCTCCATATTGGTTGATATGATCAAAGGCAAACAGTGCCAAAGTTAGAGTGTAAGGAACTCTGCTTATAGTTCTCTAATGTCATggttaattttgtaatttttgcttttctattttcattttctggCATTATTCTCACTTTAATTCAGCTTTTAATGATGGTTAACTGCCTTCTGAAgatcattttcagttttattgtatttatgtgAAGGGAGAAGGCTGTTGTTGCACAATGACCTGCCTCtaaaaagactttttaaagaTGTAGCTGGAATCTGATCCTTAACATCACAAGCAAAATATGCCTAATAAAGCATGCCGATGTGCGACATAATACACAGAAGGATGCTGTTTTCTAATCTCTACCAGCGTATTTCAATATTCCTGCCTATTCCTTGAGAGGTCTTACAGAGAAAAACTGTGAATGTCAAAATGTTAGAGATGTCCTGACATGATAGTGAGTATCAGCTCCCTGATGACCACAGAAAACCTTCCGTAGCCAGCTACCCCTTTaactttaaaatacattttacagacTCCCTCAGTAATAGTAATCCAACTATTCAGATTATAAGacttatttaaatgtgtacaacaatattctggctattttttTCAGCCCTACAGCTTTTTCTTATTCTTGAATACTTCAACAAACGTTCCACAGAACATCACAGGTCCAAgtagacattatttatagggCAACATATTTTTCAGTTACGAAGGTTTGCATTAAACCTGTTTAATTCAGTTCACCAATCAAATAGACCAATACcgtaagaactcaataataaatataataactgataatggtggattgtgatttccaccactgtaacaaaatttaaaaaacaaacaaacaaaaatgccaCTATTATAAAGCATGCTGTTGTGATGCCTCTGATGTTTCACTTGACAAAGTGAACAGAGAGGCCCAATTATTAAACAGGTAGCAATATCAGATGAGTATTAAATATAGCTGACCTAAACTGAGAGCTCTTATAATCAGTATTTTATAGCAAATTGAAAAAGTGTGATTGGGACATCCATAAAGACTGAAATCTTTCAGTGAGGCCAGGTATGGGACGACaaacatcctctctctctctctctctctctctctctctgattttgCAGCAAAATCATAAGAGGATATACATTATTGCATATTGAGAGTGACACAGATGATGGTTTTGCTACATCATAGTGTaaaatagcttttttatttctagagcATTCCCACAGTTTGTTTTGCTGCTGGTTCTACTAGTTTtttggggttgggggttagaGCTTACCACCAGGGTTAATGTTGATCTTATGTGCTAGAATTATGTTTCCTGTGAATTAGAGTCCCTCATGTCATATTGCAGTGTGAGCTGCCCATTTGTGTTACTCATGTGTTCTTGGTTCTCTGTTcaagaaattattaaaaaaaataatcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75437 lncRNA upstream 42199 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 50329 13276821 ~ 13277704 (+) False slc16a13
XR_004578006.1 lncRNA upstream 60999 13259391 ~ 13267034 (+) False LOC117597082
TU75440 lncRNA upstream 61554 13258874 ~ 13266479 (+) True LOC117597082
TU75479 lncRNA upstream 108174 13213977 ~ 13219859 (+) False tmem88b
TU75666 lncRNA downstream 12548 13387598 ~ 13387954 (+) True G63889
TU75685 lncRNA downstream 42171 13417221 ~ 13417441 (+) True G63901
TU75682 lncRNA downstream 84312 13459362 ~ 13467726 (+) True G63898
TU75739 lncRNA downstream 129410 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 194952 13570002 ~ 13572833 (+) True G63976
XM_026935975.2 mRNA upstream 814 13311880 ~ 13327219 (+) True agfg2
XM_026935976.2 mRNA upstream 814 13311881 ~ 13327219 (+) False agfg2
XM_026935970.2 mRNA upstream 42367 13276112 ~ 13285666 (+) True slc16a13
XM_026935898.2 mRNA downstream 16759 13391809 ~ 13394172 (+) False si:ch73-335l21.2
XM_034303510.1 mRNA downstream 16760 13391810 ~ 13394172 (+) True si:ch73-335l21.2
XM_026935896.2 mRNA downstream 16761 13391811 ~ 13394172 (+) False si:ch73-335l21.2
XM_026937145.2 mRNA downstream 24385 13399435 ~ 13416861 (+) True dvl2
XM_034303680.1 mRNA downstream 45483 13420533 ~ 13436596 (+) True acadvl
TU74787 other upstream 1032910 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1630738 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2664626 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2762309 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2796505 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 43327 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 95719 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 183573 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 330526 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 880694 14255744 ~ 14269340 (+) False brms1

Expression Profile