RNA id: XM_026935976.2


Basic Information

Item Value
RNA id XM_026935976.2
length 3253
RNA type mRNA
GC content 0.45
exon number 13
gene id agfg2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13311880 ~ 13327219 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAATTTCCGGATAACACTAGAGATATGCacgtgaaaagaaaacaaaacaagacaaaacaagatCTGGTTAATTATATTAGTGAGTTGTTTTTGGCAGCTAATACATCCTGTTGCTGTTCAGCTTTTCCTGAGGATCTGTGCGCTTCATGCATCGCTGCTTTCCGCACTGAAAGCCCAGATTTCTGTCACCGCTCCAGCAAAGCAGCGTCGTGTCTTCGTGGAAGGACGGGCGGGTTCTCCTGAGCTTCACCATGTAACACGATGGTCATGAGTGCGTGGCAAacgcaagaagaagaagaagaagaagaaaatctcAGGACAGATATGAAGTGGAAAGCGATCATTGCTTTTTAAGGCGCGCGCTAGAAATTGCTTATGGACAGCAATGGATAACTAAATATGCagtagcaaaaaacaaacaaacaaaaaactccaGTGGACAGCTCGGTGACTACGCATCTGAAATATGCATGTGAGATCCCTGAGATAAATCGTCTGAAGATTATGCAGTCGCAGAGTGGCTTGTATAAGGCGGACCTGAGAAACGCAGAGGAGTAAAGCGAAGGAGGAACTGAGTGCAGTCTAACGGAGCGCCACTTCACGTCTCCCTGCTGCAGACTCGACATCCCTGACAGGCggtgtatatctatatatatctatatatgtatatgtgtgtgtgagagagagtgtgtgtgcaaccAACGCACGAGCATGTCGAACCGAAAGCACCGGGACAACCAGGAGATTTGCGCCCGCAAGGTCCGCGAGCTCGCGCAAACAGGGCCCAATAAACACTGCTTCGAGTGCGGCCAGCCTGGTGTGACTTACACCGATATCACCGTGGGCTGCTTCGTTTGCACATCATGCTCCGGAATGCTGAGAGGGCTCAACCCGCCCCACAGGGTCAAATCCATTTCCATGACAACCTTTTCCCAACAGGAAGTAGAGTTTTTGCAAAACCATGGCAACGAGGTTGGGAAAAGGATGTGGCTCTGTACGTTCGACCCAAAGACTGATGGCTCTTTTGACACATGTGACTCACAGAAGTTTAAAGAATTTCTTCAGGATAAGTATGAGAGGAAGAAATGGCATTTCTCTAAGAGTAAAGGAAGGAGGGATGTAGAGGCTCCATGGAGTACAGGAGTTCAAGCTCCTGCTCAGACTCAGCCTCCTTCTGGAAACCCAATGAACCCTGCAGCCCGGCCTTCACGTGCTCTGtCCCAGGCTCAGGTGCCGTCATGGGATAGAGTTCCAGCTGTGTCTCCAGCTGATGTTCGTACAGAGGTTTTCACAGCTCGACCCACTCGATCTCAGAGCTTCAGAGACCACACTATTAAAGaTTCCTTGTTAAGTGGGATGGAGAGGCAGAGACCAGGAACTATTTCTCCAGGAATGGGACCCCAGAGTCGCCTTCCCTCTTTCCCTGCCCTTCCACGCCCTTCAGGTCGCACGGTATCCTCAGGAGGCGGAGCACCATTTAGGACTGTCCCTAAATCTCTAAGTTTGGACTTTGGAGGTCTTGGTTCAACCCCTAGTGCACTAAGCCCTCAGGCTCCACCACTTGTCTCCCAGGACAGGTATGCTGCCGTGTCTCAACTCGACAAGGCCTTTTCTGACAACACGCCCACCACAGTTGCATCCACAACTCCCTCTAGTGGCCCTCCACAATACAGCACCCTGTTTGGCAACAGACTCTCTTCTAGTTCCACACCTGCAAGTTCTCCAGGTGTGCCAGAGGTCACTGCAGCCTCTCAGACATTTGCAAATTTCCCAAACCCCTTCTCTTCTACAGCCAGCAGTTCACAGCCTGCTTTATCCCCCAGTAACCCCTTCAACAGCACAGCCACAGGTGACAGCAATACACTTGTGTCACCCTCTCCTTCAGCTGCCTTCCCTCACTCAGCCTCCTTTCCtgctcccacctcccagaatgCTTTTCCTCATGAGCCAGCTAATAATCAGGAGACAAATGGTTTCACGTCTATCCCTGCACTGGAGTCCACATCCAAAGTCCAGCGGCCGATGTCTGTCAACCCATTTACTGGGACGGTTTACCCCACCAGAGGAACGTCACTGAACCCCTTCATCTGATTCCACCATCCCtttgaggagagagagagagagagagagagagagagagagagggttgtGGGTGtatgtgaaagagagacagagagcttgATGCCATTTCCATGACTTGAGGAAACTCCCTCCATCAGATAAGGgagataaacacacatggaCTGCCCATTTTCCTGAGATTaagttaatgtgtgtgtattaaagagTGTACCCCTTTTGTTTGAGTCTGTGTTcgtatttgtatgtgtgaatgtgttatgtgtgtgcaCCATTTTGCACCACACACTACAAATCAAAGTTTTTGTAAgcatgtgtgtctttgtgttcattttttttttttatgtatgtttgtgCGTGGGTGTGTTCATGTCATACGTGTTTAATCAAACGAGTTATCTAATGGTGCCAGATAAGAAGTGGCAatagcagaaacacacacacacacactgctgctttaatctcCTGCCCTGTACTCTTGATAAATCATTGCTAGCCTTTAGCCTGCACCCAACTGGATTGCATTTTAGCAAAGACACCTAAGTATCAAGTTGTAGTAATTAAACACTGAAAGAGGGCAGCACGCAACTTGAGCTTcaaatattatgatattattaataCGAAGTGTGCGGTTTTATTTAGCTCTCATTTGGCAGCCAACTCTCCAAATGCATGTTAATAGGAGAAACAGACTTAAtcatgtgtttgtatatgtatgTGACGCATACATGTATGTAAGTCATCAGCCTGCATGCGCTTCATGAGCAAGAAGCTGCCTGAATGTACTGCAATTTTGGTAATTTCACACAAAGTGTTATTTGCATTATTCATGTTTATGGACCAAATAATGTCAGGCatcatgtacatttttttttcttttccagtatTTTTGCATTGGTTCatttagaatgtctttgtaacAGGAAGTATCCACATGCATAAAAAgctattcatttgtttgtgtcaATGTGTATCTAATTGTGTAAGTTACATTATGGAAATCAAGCCTCAGTTTGAATTTTGCTGCTTCAGGATTTCATGCAATATAACTATTTTTaagatttgcatttatatttttatctgtgaAAAAAGACATCATTGCGTTATGAATGTAATTGCACTTCTTTAGAGCTTTAAAgtggaaattaaaaaagagaaaggtaTCACTTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75437 lncRNA upstream 26047 13284541 ~ 13285834 (+) False slc16a13
TU75438 lncRNA upstream 34177 13276821 ~ 13277704 (+) False slc16a13
XR_004578006.1 lncRNA upstream 44847 13259391 ~ 13267034 (+) False LOC117597082
TU75440 lncRNA upstream 45402 13258874 ~ 13266479 (+) True LOC117597082
TU75479 lncRNA upstream 92022 13213977 ~ 13219859 (+) False tmem88b
TU75666 lncRNA downstream 60379 13387598 ~ 13387954 (+) True G63889
TU75685 lncRNA downstream 90002 13417221 ~ 13417441 (+) True G63901
TU75682 lncRNA downstream 132143 13459362 ~ 13467726 (+) True G63898
TU75739 lncRNA downstream 177241 13504460 ~ 13504719 (+) True G63936
TU75791 lncRNA downstream 242783 13570002 ~ 13572833 (+) True G63976
XM_026935968.2 mRNA upstream 26215 13275812 ~ 13285666 (+) False slc16a13
XM_026935960.2 mRNA downstream 814 13328033 ~ 13375050 (+) True si:ch73-335l21.1
XM_026935961.2 mRNA downstream 814 13328033 ~ 13375050 (+) False si:ch73-335l21.1
XM_026935962.2 mRNA downstream 814 13328033 ~ 13349543 (+) False si:ch73-335l21.1
XM_026935963.2 mRNA downstream 815 13328034 ~ 13375050 (+) False si:ch73-335l21.1
XM_026935898.2 mRNA downstream 64590 13391809 ~ 13394172 (+) False si:ch73-335l21.2
TU74787 other upstream 1016758 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1614586 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2648474 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2746157 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2780353 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 91158 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 143550 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 231404 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 378357 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 928525 14255744 ~ 14269340 (+) False brms1

Expression Profile