RNA id: XM_026935981.2



Basic Information


Item Value
RNA id XM_026935981.2
length 1077
RNA type mRNA
GC content 0.44
exon number 3
gene id cskmt
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16653821 ~ 16655884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


AGCAGACGTTGTGTCCTCACTAGTTGAACGTTTTGAGTTATTCTCCAGTCGAGTTAAAATGTTGCTATTAAACAGGGTTTGCTTGTCGTTGAAAATTTTGAGAAAAGTGTCAGCCCGGCGCTGGCATCATACTAGTTTGACAAGAGGACTGCATGTTAATAGAAATGGTGTAGCAACTAATTAACTGGGCAtacctgagtgcaaaagtttgcatctcccAAGATGACCTAATTAACAACATGGACAAGAAAGCAACATGGgacagattttacacagaaaacaGCCGGAAAGGAAAATTCAAGAACTTTGAGTGGTTCTTTGGCTTTCATTCAGTCAAAGACTACATCCTGCCTCTGCTGCAGTCCATGTCTGATACTCCTGCACCATTACATGTTCTGGACATTGGCTGTGGCACGTCAGCATTAGGGCCCAGTGtctacacacactcccagtGTGCAGTGAAGGTCACATGTGCTGATATCTCTCCAGTGGCGGTGCAGTTAATGCAGGAACATGTTGAAAGTACACCACTACAACCCTGCAACCCGGCTTCCACCCTCATCTTCAGAGAAATGGACTGCACAGAGCTGGAAGGACACTTTGAGCCCAGGAGCCTGGCCTTGATAGTAGACAAAGGTACAACAGATGCACTGGTGAGGACTAAGGAAGGGCAAGCAAAAGCTGGTCAAATTGTACGGCAATGTCTGACTGTGCTGAGACACTCAGGGAGCCTGCTGCAGTTTTCAGATGAAGATCCTGATGCCAGGCTGCTTTGGCTAGAGAAAGAGAGTCAAGGCTCAGAGGTGGCAGCTGATGTATTAGTACACGAAGTTGGAGAATTACGAGGGGTCACTTACTTCTGTTATCAAATAACTCCTTATACAGCCCAACACTGACACCTTGAACATTACTCTGTGTTTTATGTGACATGGTCATTTTGCTTTGTgtaattacattacatactCCAAACATTAGATTACTATTGTCATTATTCCAGTGGTTTTTGACCATGATTACTGTATGCGCAATCCAGTCACAGTGTCTGCATTTTGGTATTTGTGAATCACACCCTTTGGC

Function


GO:

id name namespace
GO:0032259 methylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K00614 CSKMT, METTL12; citrate synthase lysine N-methyltransferase

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU77679 lncRNA upstream 59414 16592447 ~ 16594457 (+) True G65601
TU77650 lncRNA upstream 76134 16569687 ~ 16577737 (+) True G65580
TU77609 lncRNA upstream 139030 16514637 ~ 16514841 (+) True G65542
TU77544 lncRNA upstream 210971 16431945 ~ 16442900 (+) True G65495
TU77422 lncRNA upstream 223185 16430461 ~ 16430686 (+) True G65395
TU77739 lncRNA downstream 20645 16676529 ~ 16677366 (+) True G65643
TU77740 lncRNA downstream 68011 16723895 ~ 16729352 (+) True G65644
TU77752 lncRNA downstream 95976 16751860 ~ 16752090 (+) True G65654
XR_003403984.2 lncRNA downstream 102343 16758227 ~ 16762011 (+) False LOC113539905
TU77754 lncRNA downstream 102376 16758260 ~ 16763461 (+) False LOC113539905
XM_026936347.2 mRNA upstream 5742 16605696 ~ 16648129 (+) True shroom4
XM_026936348.2 mRNA upstream 5742 16620744 ~ 16648129 (+) False shroom4
XM_026936349.2 mRNA upstream 6085 16636648 ~ 16647786 (+) False shroom4
XM_034304130.1 mRNA upstream 163388 16470260 ~ 16490483 (+) True zpax4
XM_026936430.2 mRNA downstream 13573 16669457 ~ 16674227 (+) True krcp
XM_034303747.1 mRNA downstream 19551 16675435 ~ 16715097 (+) True mark2b
XM_034303748.1 mRNA downstream 19551 16675435 ~ 16715097 (+) False mark2b
XM_034303751.1 mRNA downstream 19551 16675435 ~ 16715097 (+) False mark2b
XM_034303750.1 mRNA downstream 19551 16675435 ~ 16715097 (+) False mark2b
XR_003404046.2 other upstream 283187 16367956 ~ 16370684 (+) False LOC113540582
XR_004578074.1 other upstream 334705 16310213 ~ 16319166 (+) False LOC113539780
XR_003403994.2 other upstream 613887 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1994935 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2384531 14255744 ~ 14269340 (+) False brms1
XR_003404110.1 other downstream 104635 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 104865 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 105097 16760981 ~ 16761107 (+) True LOC113540745
XR_003404113.1 other downstream 105382 16761266 ~ 16761338 (+) True LOC113540743
XR_003404114.1 other downstream 105688 16761572 ~ 16761647 (+) True LOC113540744

Expression Profile


XM_026935981.2 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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XM_026935981.2 Expression in each Bioproject

Bar chart with 3 bars.
XM_026935981.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.