RNA id: XM_034303878.1


Basic Information

Item Value
RNA id XM_034303878.1
length 2069
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC113539885
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9474177 ~ 9484601 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcagcaggacaggatggagctcagtccactccctgtgatgctctTGTTGATTTCACTCATCCAAGTGGGACAAGCACAggAGTTTAAACCAGTTGTGACTGTGCAGCCGAATGCATCACAAATATTCAGCGGAGAGACAGTTACACTCACATGTAATATTTCGGGAGGAAGTGGACTATACTACTGGGACAAAGATGGTGTTAATGTTCACAGATCTGCTGAAAATGTCTACACTATAAAAGTAGATCAGAGTCACAAATACAAATGTTACGGGTCTAAGTATGGACAGTCCACGGCATTTAGTGATGAAGTGACTCTCTCAGTGATAGACAGACCAAAAGCTGTTCTGACTCTGCAGCCTGATGGACAGATATTCAGTGGAGAGGAAGTCactttcacatgtgaaatacGAGGACATGCAGACACTGAGTGGATGTACATCTGGTATAAAGATGATGTCCAACTTTCCTACACTGAGAGCAGggaatatttattcattactgCTGAGTCTTACAGCGGTAAATACACCTGCAGTGGACAGAGAAAAAGTGACTCTCAGACCTCAGAGACCAGCAACGCTGTTACACTCactgtgtcagAAAAACCCAAACCGAGTATGAGTGTGAATCCTCAGAGCTCCATCTACACTGGAGACAGAGTTACTCTGAACTGTAGTCTGCAGTCTACTGGATGGATTTTTCTTTGGTACAAAGATCGGAAATCAGGATATCTGTTCCCTGTAGCTGAAGACACCAACACACTCCATGAAACAGTCTCTAATGCCGGAgtaacagtgtatcagtgtatagCACGCAGAGGGAACTACTACTCAGAGTTCAGTGATCCGGTCACGATTACAGTGAGAGCGCTGCCAAAACCTGTGGTGTCCATAAAGCCTGATAAACAGGTGTACAGAGGAGAGACTGTCACTCTCAGATGTGACATACAGGATGAAGTGGACTCTTACTGGAACTACAGCTGGACTAAAGATGGTTCTGGTGTCAGCAGTGAACAGGAGTACAGAATCAGTGGTGCTGAAAtgacacacacaggtaaatacACCTgtagaggaacagagagaggaggctcacactcctcacacaccagtgatgctgttacactgactgtatcagCTGCAGAAAATCCTAAACCTGAACTCATGTCAGACCTTAAAGGAGCTGCACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGATcaaagacacacagagcactgagactgagactgagacacacCACTACTTCATCAGATCAGTTAGAGTCTCTGATGGAGGTCAGTACAAGTGCAGAGCTGGAAGAGGAACCCCagtctactacacacactacagtgatgCACTCTGGGTAAACGTTACAGACGAATTTCCTCCAGTGTCTCTGATCATCAGTCccagcagaactcaacactttaCTGCTGAgtctctctcactgagctgtGAGGACCAGAGTGACTCTACTGGATGGACAGTGAgaggatacacacacagtgagacactGTTCGATTGTTCATCAGTTTCAGGATCTACATGTAACATCAGCTCTctctctacatcacacactggaGTTTACTGGTGTCAGTCTGAATCCGGAGGACACAGTAATTCTGTCAACATCACAGTGCACAATGGTGATGTGATCCTGGACAGTCCTGTCCATCCTGTGACTGAAGGAAATCCTCTGACTTTACGCTGTTTATATCGCAACCCAAAGATCTCAGGCTCTGGTGTTGATTTCTATAAAAATTATTCCATCCTCCAGTCCCAGACTAAAGGAGAGATGACCATCCACACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaaCACCCAAAGAGAGGAGAGTCACCGAAAAGCTGGGTTTCAGTCAGAGAAACTTCAATGTCAGTGCTCAGACTGATCAGTAGTCTAGTGACGGTCTCTGTGTATCTGCTGGTGACCATCATTCTAGCAGTGAAATGTTATAGAGCTCGAGACTGATGAAGACAACACCCAGAATGCCATTACAGAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73311 lncRNA downstream 20156 9448515 ~ 9454706 (-) True G61881
TU73304 lncRNA downstream 44030 9428794 ~ 9430832 (-) True G61876
TU72863 lncRNA downstream 161843 9312797 ~ 9313019 (-) True G61518
TU72841 lncRNA downstream 315747 9151418 ~ 9159115 (-) True G61496
TU72836 lncRNA downstream 349554 9120761 ~ 9125308 (-) True G61492
XR_004578142.1 lncRNA upstream 15118 9499719 ~ 9499931 (-) True LOC117597234
XR_004578141.1 lncRNA upstream 18461 9503062 ~ 9503274 (-) True LOC117597233
XR_004578120.1 lncRNA upstream 21843 9506444 ~ 9506654 (-) True LOC117597212
XR_004578132.1 lncRNA upstream 22434 9507035 ~ 9507242 (-) True LOC117597224
XR_004578122.1 lncRNA upstream 23477 9508078 ~ 9508282 (-) True LOC117597214
XM_026937205.2 mRNA downstream 36895 9435134 ~ 9437967 (-) True dusp19b
XM_026937206.2 mRNA downstream 36898 9435134 ~ 9437964 (-) False dusp19b
XM_026935959.2 mRNA downstream 61949 9391003 ~ 9412913 (-) True kcnj10a
XM_026936209.2 mRNA downstream 85381 9383985 ~ 9389481 (-) False LOC113540032
XM_026936210.2 mRNA downstream 86763 9383985 ~ 9388099 (-) True LOC113540032
XM_034303884.1 mRNA upstream 49396 9533997 ~ 9571464 (-) False capn1
XM_026936422.2 mRNA upstream 398110 9882711 ~ 9889757 (-) True zgc:101810
XM_034303449.1 mRNA upstream 407750 9892351 ~ 9896258 (-) False six7
XM_026937032.2 mRNA upstream 407750 9892351 ~ 9896256 (-) True six7
XM_026935933.2 mRNA upstream 422958 9907559 ~ 9911772 (-) True b4gat1
TU72884 other downstream 136117 9337826 ~ 9338745 (-) True G61537
XR_003403995.2 other downstream 147431 9314849 ~ 9327431 (-) False LOC113540087
TU72820 other downstream 490409 8983234 ~ 8984453 (-) True G61478
XR_004578041.1 other downstream 896012 8575506 ~ 8578850 (-) False LOC113526753
TU71817 other downstream 2575635 6882469 ~ 6899227 (-) False LOC117597002
TU73323 other upstream 41973 9526574 ~ 9528803 (-) False LOC113526752
TU73432 other upstream 291677 9776278 ~ 9805318 (-) True G61972
TU73337 other upstream 543386 10027987 ~ 10037575 (-) False G61900
trnan-guu other upstream 989795 10474396 ~ 10474470 (-) True trnan-guu
trnan-guu_1 other upstream 991022 10475623 ~ 10475696 (-) True trnan-guu_1

Expression Profile