RNA id: XM_026935987.2


Basic Information

Item Value
RNA id XM_026935987.2
length 1705
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC113539887
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29752071 ~ 29760972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACAGAACTTTTATTATTCCAAGATGGTTCACTTACATATAGTTTCCGGGTTTCACCATCTTAGTGGAACTCTAAGATGGCGGCGGTGACGACAATGCGGCGCTGCTTCAGGACCCTGAGACATCTGCCCCAGTTGTCGTCCCGCCGCTGCAGACCGTGTCCCAGGCTCTGGACATCTGGACCTGATCATGTCCTCCATCACCCTTCAGCTTTCAGCTCACAGCAATGGAGAGGATTCAGACAAAGCAGTGTGGCTTCTGGACAAGTTCTTCAGTTCAAGTTGTCGGACATCGGCGAGGGTATCATGGAGGTGACGGTCAAAGAGTGGTATGTGAAGGAGGGTGATAAGGTTTCCCAGTTTGACAGCATCTGTGAGGTGCAAAGCGACAAAGCCTCCGTCACTATTACTAGCCGATATGATGGAATCATAAGGAAGCTTCACTACGACGTGGACGCAGTCGCCTTTGTCGGATCGCCTCTCGTAGACATTGAGACAGACGGGCCACAAGATGGCGGTCATGAGGAGGACGTTGTTGAGACACCTGCAGTGtctcatgaacacacacaccaagagaTTAAAGGACATAAAACTCTGGCTACACCTGCAGTGCGACGTCTTGCCATGGAGAACAATGTTAAGCTGAGTGAGGTGGTGGGGACAGGGAGGGACAGTCGTATCCTAAAGGAGGACATCCTCAACTTCTTGGCCAAGCAGACGGGTGCTATCCTTCCTTACGATGACGTGAAGGTGCCGTCGGCGCCAGCTGCTCCTGCCAAGGCCGAGAAACCAGCCCCGAGTCCTACACCCACCGTCCCCCGACCAGTCTTTACTGGGAAGGACAGGACAGAGCCACTCAATGGTTTTCAGAAGGCCATGGTGAAGACAATGACGGCTGCCTTGAAGATCCCTCACTTCGGTTACTGTGATGAGGTGGACCTCACTGAGCTGGTGCGATTACGCTCAGAACTGAAAGGTCTGGCTGAATCTCAGGGAGTCAAACTTAGCTACATGCCATTCTTCATTAAGGCTGCGTCTCTCAGCCTGCTGCAGTTCCCCATCCTCAACGCCTCAGTCGATGAAGACTGTCAGAACATCACGTACAAGGCATCCCATAACATCGGTCTTGCCATGGACACTGTGCAGGGTCTGCTGGTGCCCAAGGTGAAAGACGTGCAAGCTCTGAGTGTGTTTGAAATCGCAGCTGAGCTGAACCGACTGCAGGCGCTGGGCTCGGGTGGGCAGCTGGGCACGGCCGACCTGACGGGGGGCACGTTCACCCTCTCCAACATCGGCACGATCGGAGGGACCTACACCAAGCCGGTGATCGTGCCTCCGGAGGTGGCCATCGGAGCGTTGGGAAAGATCCAGATCCTGCCGAGGTTTGACGCCGGTGGCGAGCTGGTCAAAGCCCATGTGATGAGCGTGAGCTGGTCGGCTGATCATCGCATCATCGATGGTGCCACCATGTCCCGCTTCTCCAACCTGTGGCGCTCGTACCTGGAACGACCCGCCTCCATGCTGCTAGACCTCAAATGAGACACGTTCACTCTGTGGGGTCCTTAAAAAACTGGCGTTTCATCACTACACTGTGCCTTCTAACAGTTACTCACAAAAAAAGTGACAATCTTGATCTTTAACCTTTGATTGAACTTGGAAGTATGTgtgcatattttaataaaattacagtTGTTGTGTCTCATGTA

Function

GO: NA

KEGG:

id description
K09699 DBT, bkdB; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86721 lncRNA upstream 18708 29732651 ~ 29733363 (+) True G73155
TU86688 lncRNA upstream 28321 29722066 ~ 29723750 (+) True G73123
TU86720 lncRNA upstream 32754 29718462 ~ 29719317 (+) True G73154
TU86717 lncRNA upstream 39389 29712470 ~ 29712682 (+) True G73151
TU86686 lncRNA upstream 70930 29673514 ~ 29681141 (+) False zgc:153115
TU86735 lncRNA downstream 4148 29765120 ~ 29766106 (+) True G73169
TU86755 lncRNA downstream 31544 29792516 ~ 29794205 (+) True G73185
TU87101 lncRNA downstream 168966 29929938 ~ 29930168 (+) True G73512
TU87134 lncRNA downstream 271338 30032310 ~ 30032788 (+) True G73533
TU87172 lncRNA downstream 323466 30084438 ~ 30084819 (+) True G73564
XM_034303651.1 mRNA upstream 31303 29704488 ~ 29720768 (+) True rc3h1b
XM_026935837.2 mRNA upstream 70896 29673705 ~ 29681175 (+) True zgc:153115
XM_034304047.1 mRNA upstream 128274 29620111 ~ 29623797 (+) True asip2b
XM_034303438.1 mRNA upstream 149241 29596466 ~ 29602830 (+) False LOC113540482
XM_026935838.2 mRNA downstream 206699 29967671 ~ 29976291 (+) True rgs18
XM_026936318.2 mRNA downstream 225213 29986185 ~ 29989435 (+) True rgs1
XM_026936317.2 mRNA downstream 237532 29998504 ~ 30001345 (+) True rgs13
XM_034303701.1 mRNA downstream 253683 30014655 ~ 30022571 (+) True blvra
XM_026937116.2 mRNA downstream 284923 30045895 ~ 30050490 (+) True ebi3
TU86682 other upstream 129034 29619993 ~ 29623037 (+) False asip2b
TU86406 other upstream 839967 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 2130688 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 2131394 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 2194169 27557765 ~ 27557902 (+) True LOC113540696
TU87615 other downstream 985159 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 985159 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1300758 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1590289 31351261 ~ 31353144 (+) False c4h22orf39
XR_004578111.1 other downstream 2008850 31769822 ~ 31776798 (+) True LOC113540067

Expression Profile