RNA id: XM_026935989.2


Basic Information

Item Value
RNA id XM_026935989.2
length 1658
RNA type mRNA
GC content 0.50
exon number 14
gene id sppl2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26578794 ~ 26595990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagtagtcagacatcatcatcatgggGTGTTTATCAGCACTGATCTGCGCTGCTCTTCTCATCACAAAGGTTTTAGGAGAATACGGCATAGCTCATTTCAGTGAGTTGGGAGAAAGTGAAGGGAAGGATTACTGCATCCACTTCAACTCCCGCTGGACACCCTTACCTCACCACCTCCACAccatgatCCCTCCAAAGGGGAATAAGTCTCAGTACGAGGAGATCGACATTCCGCTCGCTTTAATCAGTTACACTGACATGCTGGACATCCGTACGCGTTTCAGAGCCAGGAAGCAGGTGGTGCTGTACTCTCCTGACGGGCCAGTGGTGGACTTTAGCGTGGTGGTGATGTTCTTCATGGCCGTGGGGACGGTAGCGGGGGGAGGATACTGGACCGGTGTCCGAGAAATCAAAAAACGGATGAAGGAGGTGGAGAttggagagaaagaggagagagagacggtgaACTTGACTCCGACCACGATCGCTGTGTATGTGGGGATGTGCTGCCTCATGCTGTTGCTTCTTTATAAGTTCTACGATTATCTGGTGCATGTCTTCATCTGGATCTTCTGTATCACCTCCTCTGTGGGTCTGTACAACTGTCTCTGGCTTATCGTCTGCAGAATTCCTGTCGGAAAGTGCAGgaTTCCCGAGAACAAGCTGCCCTACTTGAAAAAGCGGCCGGAGGTGCGGATGCTGCTGCtgggtgtgttgtgtgtgagtgtgagcatAACCTGGGGTGTGTTCCGCAACGATGaccggtgggCGTGGGTGCTGCAGGACACACTGGGCATGGCTTGCTGCCTCTACGTTCTGAAAACATTCAGACTGCCCAGCTTCAGAGCATGCACTCTCCTGCTCACGGCTCTGTTAGTGTATGATGTCTTCTTCGTGTTTATAACACCTTATTTTACTAAGagtgggGAGAGCATCATGGTTGAAGTAGGAGCAGGTCCTTCTGATTCATCCACACACGAGAAGctcCCGATGGTTCTGAAGGTTCCTTATCTAAACTTTTCTGCTATGGCTCTGTGTAGTCGGCCATTTTTACTGCTGGGTTTCGGAGACATTTTAATTCCCGGTCTGCTCATAGTGTACTGCCACAGGTTTGATGTTCTTGTACACTCATCACGGGTTTACTTCCTGGCCTCCACTGTCgggTACAGTGTGGGTCTGCTCCTCAGCTTTGTGTGTGCGTTACTGATGAACTCGGCTCAGCCAGCTCTGCTCTATCTGGTTCCGTGCTCTCTGCTGTTCAGCCTGACGGTGGCGCTGTGGCGCTCTGAACTGAAGCCCTACTGGAATGGGGATATGTCTCTGCCTTCTCCTGTCGCCATGACCCCTGTCACTCGAACACTAAACCCAGCCATGTCCGAGCCCTCGGCCAGTCAGGAGCCAGTTGTGAGTGAAGTGACCAATCATGGTGAAGACCCGCCTCCACCTACAGAGGAGGAATGTCCTCAGAGGACAGAAGGCACAACTAATGAAGTGGACTGAAGGCAAAAGGGgatgactttctttctttattaaattatttattcatttatttattttatctattttatgGCCTGTGATTTTTAAACTCTGCTCttctaaataaacaaacagtggAATTAAGAGAATTAT

Function

GO:

id name namespace
GO:0050819 negative regulation of coagulation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84896 lncRNA downstream 19656 26558229 ~ 26559138 (-) True G71636
TU84851 lncRNA downstream 27764 26550094 ~ 26551030 (-) True G71596
XR_004577960.1 lncRNA downstream 79527 26497033 ~ 26499267 (-) False LOC113540239
XR_003404010.2 lncRNA downstream 79527 26497033 ~ 26499267 (-) True LOC113540239
TU84840 lncRNA downstream 114476 26464030 ~ 26464318 (-) True G71589
TU84978 lncRNA upstream 65869 26661859 ~ 26663778 (-) True G71693
TU84981 lncRNA upstream 70227 26666217 ~ 26666592 (-) True G71695
TU84982 lncRNA upstream 71073 26667063 ~ 26667730 (-) True G71696
TU84983 lncRNA upstream 72305 26668295 ~ 26668558 (-) True G71697
TU84984 lncRNA upstream 74277 26670267 ~ 26671138 (-) True G71698
XM_026935883.2 mRNA downstream 125963 26446458 ~ 26452831 (-) True si:dkeyp-66d1.7
XM_034303639.1 mRNA downstream 202386 26371921 ~ 26376408 (-) True ltb4r2b
XM_026935881.2 mRNA downstream 210819 26338735 ~ 26367975 (-) True sdr39u1
XM_026936649.2 mRNA upstream 76757 26672747 ~ 26678848 (-) True ccnl1b
XM_026936093.2 mRNA upstream 112092 26708082 ~ 26712304 (-) True slitrk3b
XM_034303683.1 mRNA upstream 174592 26770582 ~ 26786518 (-) True copa
XM_026935911.2 mRNA upstream 191097 26787087 ~ 26790914 (-) True pex19
XM_034304027.1 mRNA upstream 196033 26792023 ~ 26805367 (-) False map1sb
TU84853 other downstream 27764 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 27764 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 202706 26373758 ~ 26376088 (-) False ltb4r2b
TU83344 other downstream 2273868 24304374 ~ 24304926 (-) True G70255
XR_003404116.1 other downstream 2541940 24036718 ~ 24036854 (-) True LOC113540746
TU85159 other upstream 500612 27096602 ~ 27100858 (-) True G71832
TU85245 other upstream 607793 27203783 ~ 27204186 (-) True G71909
trnat-ugu_3 other upstream 799367 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 800161 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 832430 27428420 ~ 27432678 (-) False LOC113540508

Expression Profile