RNA id: XM_026935991.2


Basic Information

Item Value
RNA id XM_026935991.2
length 1576
RNA type mRNA
GC content 0.45
exon number 8
gene id mettl4
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21629076 ~ 21640157 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATCTATACCGGAAGTGGCGTAGTGTTTATGTACGGATCTTCAGCACGCGCGGTTTATGTGTTGCATGGTGGTAAAGCGCGACACCGGCAAACACTTctaaagttattttaatgtttaaacttTTATCAAATTGCGATCTAGAGTTTTTCAAATGTCTGTCCTGCTATCAGATGATCGCGGGTGGCTGTTGGACGCATGTTCTTTCATAAATGAAGGATTTCGGCGGTGCTACAGTGTAAACAAGGGCCACTTCAGGTGCTATTTCAAGAAGCAGTACTTTGATATACAGAAGCCTCATATAGTGAGTAAGTGCAGGAGTGATAGTATGATCAGTGCTGTAGCACACACAGAGAGCCATGTGGATGGGGATGCCAGAATGGAGTTAAAGACACGAAGGAAGAGGAAGCGTAAAAGAAGTGAGCTGAATCAGGGGGAGTTGGATGCTGAAGAATATCATAAAAAGGTCAGGTTGTTGGTTCTGGAGGGCACTCGGTCTCTACTGGAAAGTGGGCATCACTGTGGTTATCTGACAGAAGATTTACATACAGTGCCAACAAAACAAATGCCTGTTCATGAGTGCCAGCTGGCTGCACTATGTGACATGGCCAAGCAGCTGCTTAAAACGGAGAATTCTGAAGCCCCACACGTGCAGGCTGTTAATGGCCATGCAGACTCGGATGCACACCTTGATCTGTTCTCGTGCCTCACAGAAAATCCAGATGACTGTGCCCGTGAGGTAACGCTAATGGGGGAGACGTATTTCCTGCCTCCTCGCAGCCGTTTCCTGTTGTCTGACATCACATGTTTACAACCACTTATCCGCAATGGAGACAAATATGACCTAATAGTTCTTGATCCACCCTgggaaaataaatctgtgaaaagAAGCAGTAGGTACAGTTTTCTGCCATCTTCTCAGCTCAAAAAACTTCCTGTGCCATTGTTGAGTGCAGCAGGATGTGTGGTGGTTACTTGGGTAACCAACCGTCCTCGCCATCTCCGGTTCGTCAAAGAGGAACTTTATCCTCACTGGGGAGTGAAGCTACTTGCAGAGTGGCTCTGGGTGAAGgtGACCCGGAAAGGGGAGGTAGTTTTCCCCCTGGATTCGCCACACAAGAAACCTTACGAAGTGTTATTACTTGGAAGGTTCTGTGCTAGCAGTGACAGCACAACTAGATCTGAAGTGTGTGAGATCCCAGATCAACGGCTCATAATTAGCATTCCCTCAGCACTGCACTCTCAGAAGCCAGCTCTCTCAGctgtgctgAAGCCATACATTAGGCCTAAAGCTAAGTGTCTGGAAATGTTTGCTCGAAGTCTCCAGCCTGATTGGACAAGCTGGGGGAATGAGGTTATCAAATTCCAGCACCACAGCTATTTTACCGTAGAGAGTGTGGAATGTGCACATGACACATTTACTGAGATGACCGATGCAGATCAACAGGTAGACACTAGAGTAACGGACAAATCTGCCTGTCTGTGAACCTAAGAACAATTTTAGAAATATAAActtcttaatatttatttttattactggaAAACAGCATTGATATTAAACAGGTTTTGTACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81294 lncRNA upstream 141589 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 307671 21321145 ~ 21321406 (+) False plag1
TU81190 lncRNA upstream 312562 21316255 ~ 21316515 (+) True G68435
TU80993 lncRNA upstream 394819 21234025 ~ 21234258 (+) True G68313
TU80981 lncRNA upstream 419753 21205745 ~ 21209324 (+) True G68304
TU81417 lncRNA downstream 92789 21732946 ~ 21749319 (+) True G68621
TU81415 lncRNA downstream 113951 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA downstream 113951 21754108 ~ 21762229 (+) False LOC113540377
TU81502 lncRNA downstream 274649 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 604431 22244588 ~ 22244825 (+) True G68947
XM_034303841.1 mRNA upstream 77267 21536003 ~ 21551810 (+) True LOC113540483
XM_026936689.2 mRNA upstream 93444 21496953 ~ 21535633 (+) False myom1b
XM_026936822.2 mRNA downstream 101032 21741189 ~ 21748713 (+) True enosf1
XM_034303777.1 mRNA downstream 113923 21754080 ~ 21762301 (+) False LOC113540377
XM_026936530.2 mRNA downstream 126895 21767052 ~ 21776821 (+) True LOC113540212
XM_026936150.2 mRNA downstream 147033 21787190 ~ 21793201 (+) True LOC113539992
XM_026936379.2 mRNA downstream 167567 21807724 ~ 21828839 (+) True mrc1a
XR_003404073.2 other upstream 301657 21327346 ~ 21327420 (+) True LOC113540699
TU80896 other upstream 595324 21020258 ~ 21033753 (+) True G68232
trnaa-cgc other upstream 1276592 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 1474306 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 1527979 20101025 ~ 20101098 (+) True trnar-ucu_2
XR_004578015.1 other downstream 112259 21752416 ~ 21762301 (+) False LOC113540377
XR_004578017.1 other downstream 113861 21754018 ~ 21762301 (+) False LOC113540377
XR_003404030.2 other downstream 113923 21754080 ~ 21762301 (+) True LOC113540377
XR_004578016.1 other downstream 116624 21756781 ~ 21762301 (+) False LOC113540377
XR_004578018.1 other downstream 117691 21757848 ~ 21762301 (+) False LOC113540377

Expression Profile