RNA id: XM_026936004.2


Basic Information

Item Value
RNA id XM_026936004.2
length 3536
RNA type mRNA
GC content 0.49
exon number 20
gene id ccdc39
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29541983 ~ 29553547 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCCGCCTTCCGTGGCTTCAGGACCGTGAGCAGCCTTTTGGCGCTCTCTATTGGCTGAAGACGGCGCGCGCCTGAAAGCAACCCCGTTGCTAAGCAACCCACAGCACAACGCTGGGAATACTAGCCGCTAGCGTTTAAGGCTTGTGTTAAATAAACTAAGCTGCTTGATATTTCCAGAAGTTTctgctaaataataaaaaaatggctAACATGGTTTTGTCGGAGGTTTTGTCTGAAATTGGCTGGGACCGAAAATTCGCCATTCCAGTGTCAAACACCGAGAATAAAGCTTTGGAGGATGAGAtccagagaaaacagaaagagctAGCACATGTGGAAAACCAAGCGAGTCAGCACAAGGAGAGGATCAACGCCATGACCGAACATCTGAAAAACGTCCAGCAAGAGCTCACTCACACTCAGGCTCTGTGCAGGGCTGTAGAGAAGCAGACCGATTCAGAGCAGCACTTCAAGGCCTTGGATGAGCGAGAGACCGGACGGCTGCGTCAGGAGATTTCCCAGCTGCAGAACGAGCTGATATCACTGCGAGAGAAGAAGAACTCGCAGGAGAACTACATCTTTAAAGCGACACAGAAGATGGAGGAGCTCAAGGATCAGCTGAACTGGGACCAGCAGACTCTGGACGCCTGGCTGGAGGAATCGTCCCGCAAAGACGAGGACACCATGGCCATCGTCAAGTACGCGCAGCAAGACGAGAGCAGGATTCGAGAGCTGACTCTGAGCATGGAGAAGCTGACTCTGGAGGCGAACCGGAAGAGAAAAGCTTTGGACAACGAGGTTACCGAGACCATCATGGCGCAGGTGGCTCTGGAGAAGACGGTTGAGATGGTGCAGCAGGCCCACGCGGAGAGACAGGAGCTGATCAGCCAGTGGGAGAACTCCATCGAGCAGATGAGGAAGAAAGACCAGGATCTGCAGCAGTGCGCTCTGctgctGGCAGAGACGAACCAGGTGGTCCGCGAACGCAAAGCACTCATAAAAGAGAAGCAGAACTTCCTGGCTAACGAGGTGGAGAACAACAAGGAGTGCGAGAAGAAGATTGCTGCGGTCGAACGCCAGGCCAACAGGCTACGGCAACAGTTTCAGGAAGAGGAGAGCAACCGCACACGACTGCAAGATGAGCTGGTGAGCCTAAAGGGCAGGTTGGATCGCACCGCTACAGACCTGGAGGCTAAGAGATCCCACTTAGCGAGCATCAAGAAGGACATCAACGATAAAACGGCAAAATTAGAGGATATTCAGCACTATAACGTCGCTCTAGAAGAGAAGTTGCAGGCCGTGACTGAGGAGGCGCTTAGCGTGGAGGAGAGAGCCGCTCAGATGGAGCAGCTCCACCGTGATCAGGAGAAACATCTCAAAGAAATTGACACCCAACTCCAGCGGGAACAAAAGCTCCTCTTCCAGAAAAAGCAGGAGCTGCAGACACTGCGAGCCAAGGAGAAGAATGTCGTAGCAGATATCTCAGGAAGTCGTGTAGCTCTGTCCAGCCTGGACATCCGCCTCAGTAAACTGGACCAAAACGCTCTCAAGCAGCAGGAGTACATCAATAGCCAGGATTTCCAGATCCAGCTTCTGGAGGGGAAGATGGCGCGTCTGAGCGGTAACGTGAACAAGGAGGAGAAACAGGCGCTGGAGAAGCAGGTCTCCGAGCTGAGCGAGGTGctggaggaaaagaagaaggcaGCTGCTATGCTTGCAGCACAGCTCAAGAAGCTTCAGAATGACATCCGCTGTGTGAggaaagagaatgagaagaCGGGAGCAGAAGAGAGAAACCTGACCACAAAGATTGAAGAATTGAACCTCGTTGATGACACCTTGGACAAAGACCTGAAGAAACTTCGTCTCAAGAAACAGGACAGCATAGTGGAGAACAATATCCTGCAGCTGGAGGTGAAGCGCCTCAGGACCATGCTGTATGACAAGGCGGATGGAGTTCTTTCTCTGGAGAAGAGGAAGCTACAGCTGCAGACGGCCATGAAGGAGCGGCAGGAGGAGATCCGCGTGCATCGGGAAATGCACAGCAAGCAGCTCAAGATCACTGAGCAGGAGATGCAAGGGCTCAGGGCCCAGTTGCATGAACGACTGTCCAGAGTTgacaagatgaagaaaaaatacGAGATCATCACCATTTCCATGGCTGCCCCAGAGGGCGAGGAAGACAAATCGCAGGCCTATTACATTATCAAgGCAGCTCAAGAGAAGGAGGAGCTTCAGCGCAAGGGTGACGATTTGGACTCCAAGATCCGcaaggcagagaaagagaacaaggCATTGGAAAACACCATGCACCTGCTCAATAATCATAACAGCACCTATCGCAAATCCTTCAACAAGGTCACAGAGTCCAGTCCTGAGTATCAAGAGAAATTGAAGTTAGAGGAACAGAAAAGAGCTGCAGATGAAAAGGTCAAGTTCAAGAGACGCCAAATCAGAGAGCTGCAGGAAAACATTGAGGCCATGAGCAGCTCATTGAACAGCCTGCAGCAGGAGGAAGTTGctcaaacaaaaagaaatgttgaTCTCCATGCCCGTATTGTCTCTCTGAATAAAGAGCTTGTTTCTCAGCAGGAGAAACTGGACAGGGCCACTAAACAGTCCTCCAAGCTGAAAAAGGAGATCCGCTCTACTAAAAACACCACAGAGGAGACCTTTGAGGAACGTGACATCAAGCTGAAAGAACTGAAAGACTGCAAGAAGGCCATCAATAAGATGCTCCTGGATGTCATGGAGCAGTATCCTGACCTCCAGGCGATTTTACAGACGTACTACATGCAGGCCAatcttcctcttccttctccCGCATCTACCCCTTCGAGCAGGAGTTCAAAGTTGAGCTCAGCATGtagctctttttctctcagATCTTCCAGATCCTCAGGACCATCAGCCGACAGCAGCGCCAGAGGCTCGGCAGTTCACTCGCCCTCCGTAAAGATGGTTGAGTTAGGCCTTGGACTTCGGACTCAGTCTCCTGGCAGtgacagcagcaggagcagcaggagcagtCATCTCAAGACTCCTTAATCAGCAAATCCTCCAAgttgcaaataaaatatatactaaatGTCTTAAAAATTTGAATGTTCCACTTAAATGAGGTTCGAACTCAATCCTGGGTGTCTGCAAACTCATGTATAAGGAAGTATACTCTTGCAACTGTATTAGGCTTATGGGACATGCTGAATTTGATTATTAATCAATGttctgtcattttaaaaaatccttgaGATGCTGATAAATTGCATATAATTATATCACTCATTTCTATATCTCATGCCACATGTCTTTCTGCAATGCTGAGAATGTAGGTTTGATTTGATCTACAATTGAGTGTTTGCTGCTCGCCATGACAACTGTTTTTGTTTCCGCATGAACTGTTGACATTTCACTACGTCAAAGCtgaataatttcatataaaagcaCCTCCTGAAGTATTCTAtccctcttatagcacagcagtttgccacaattacaatttttacaatttattaaagaatgacacgtcatccttt

Function

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K23729 CCDC39; coiled-coil domain-containing protein 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86653 lncRNA upstream 548 29541095 ~ 29541435 (+) True G73092
TU86650 lncRNA upstream 15065 29526202 ~ 29526918 (+) True G73089
TU86649 lncRNA upstream 17147 29524298 ~ 29524836 (+) True G73088
TU86633 lncRNA upstream 17741 29483262 ~ 29524242 (+) True G73072
TU86630 lncRNA upstream 20961 29519108 ~ 29521022 (+) True G73069
TU86683 lncRNA downstream 76046 29629593 ~ 29629823 (+) True G73118
TU86686 lncRNA downstream 119967 29673514 ~ 29681141 (+) False zgc:153115
TU86717 lncRNA downstream 158923 29712470 ~ 29712682 (+) True G73151
TU86720 lncRNA downstream 164915 29718462 ~ 29719317 (+) True G73154
TU86688 lncRNA downstream 168519 29722066 ~ 29723750 (+) True G73123
XM_034303967.1 mRNA upstream 1968 29534634 ~ 29540015 (+) True dcun1d1
XM_034303969.1 mRNA upstream 2385 29534754 ~ 29539598 (+) False dcun1d1
XM_034303968.1 mRNA upstream 2385 29534755 ~ 29539598 (+) False dcun1d1
XM_034303405.1 mRNA upstream 28204 29500475 ~ 29513779 (+) True b3gnt5b
XM_026936995.2 mRNA upstream 28204 29500475 ~ 29513779 (+) False b3gnt5b
XM_034303451.1 mRNA downstream 468 29554015 ~ 29559125 (+) True LOC113540073
XM_026936268.2 mRNA downstream 589 29554136 ~ 29559125 (+) False LOC113540073
XM_026936269.2 mRNA downstream 598 29554145 ~ 29559125 (+) False LOC113540073
XM_034303440.1 mRNA downstream 42919 29596466 ~ 29602830 (+) True LOC113540482
XM_034303438.1 mRNA downstream 42919 29596466 ~ 29602830 (+) False LOC113540482
TU86406 other upstream 629879 28874356 ~ 28912104 (+) True G72873
trnat-ugu_8 other upstream 1920600 27621311 ~ 27621383 (+) True trnat-ugu_8
trnat-ugu_6 other upstream 1921306 27620605 ~ 27620677 (+) True trnat-ugu_6
XR_003404070.2 other upstream 1984081 27557765 ~ 27557902 (+) True LOC113540696
XR_003404069.1 other upstream 1985335 27556517 ~ 27556648 (+) True LOC113540695
TU86682 other downstream 66446 29619993 ~ 29623037 (+) False asip2b
TU87615 other downstream 1192584 30746131 ~ 30767132 (+) True G73944
TU87616 other downstream 1192584 30746131 ~ 30767132 (+) False G73944
TU87706 other downstream 1508183 31061730 ~ 31097888 (+) False spsb4a
TU87898 other downstream 1797714 31351261 ~ 31353144 (+) False c4h22orf39

Expression Profile