RNA id: XM_026936011.2


Basic Information

Item Value
RNA id XM_026936011.2
length 2202
RNA type mRNA
GC content 0.44
exon number 5
gene id epoa
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12718253 ~ 12733478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGCCGGCATCCATCAGCGTAGTTTATCCGTCTCATCCGATCTGTGGGGTTTAAGCGTCGACAATATTGTGAGAGATATATGCTTGATTATTGCTATTAGGCCTATTTGTTTGCAATGTCACCCTTCATATGGAAGTCAGCCAAGATGAAAATACATAATCAGAGGATGAATTGGTCAGAGAGGAAACATTTTTAGGGTTATTTAGGCTACCTCATTGGACTGTTGCGTAAAAATACATGCTGTGTGAcaacaatgaaagaaaaacagtctTTCCAAACAGGAAGTAGGCTAGTTCAGAAACCCTTTCCAACCAATTGCACAGTCAAAGCTAGAAAAAAGTCAAACGGATGCCCCAGGATAAGTGCGAACTCAATGACAGTTCTGTTAAAGCGCTTCACTTGCAATTAATGGGCAATAGACGGGACTGCGGCCAATGCGACGAGGATCCTGCAAGAGATTATGCAAATTCTTAGATGGAGATGCCCAGACTCTTTGCCTTGCTGCTGATCGTACTGGAGTGGATTCGGCCTGGCCTGCCCTCCCCTTTGCGGCCCATCTGTGATCTGCGTGTTCTCAACCACTTCATTAAGGAGGCGCGGGATGCTGAGGCTGCTATGAAGTTTTGTAAAGAGGAATGCAGTATTGCTGTACCTCTCACAGTTCCTCTGACCAGAGTGGATTTCGATGtgtgggaaaagaaaaatACAGAGGAGCAGGCTCAAGAAGTCCAGACAGGACTATGGCTGTTAAACATGGCCATCAGCTCAGTTGGTGCATCCATCACCAACTCTGCACTTCACTCTCACATAGACGCCAGCGTCAGAAATATCGCCAGCCTCAAGCAGGTGTTGCGCAGCCTCAGTATACAGgACTATGTGCCTACAGTTGGTGGGACAGAGGAGACATGGAGAGTGTCTTCAGCCTCAGAGCTCTTCCAGGTCCACATCAACTTCCTGCGTGGGAAAGTGCGCCTTTTGCTCGCCAATGCACCTGTCTGCCAGCAACATGTCAGATGATTGGAGCATGGACAGGACAGGAACCCAACTGATTGGAGCAGACCATAATAGAAGGCAGGACATTAGTACTAAACTGTCAAGGCCATCGTGCTTACCTGCATGGAGCACTTTCTAACCATCAATGAAGATTGGAACAAAATATTTATCTTCAAGAACACTAGATGGCTTTAGGATGTAGTTCTCTTCACCGCTGCCCCGACCAACGCTGCACACTTTTCTGTATGTGATGCAGCCTGTCACTCCTTTCTCCCCATTTGACTGACATTTGTTATACTGCAGATGCACCTGCATCAACCCTAATCAGATACcacttttaataatttttttacaatgtatttgtgttgattttatgatgcttaatatttatatagattTCTACAACCTGGATTATGGGTCATGCTATAAATTTTGAGTATGAAGCCGCCTGCTTTCTGTCTTAGCCTTTAACACCTCTAAAGATTGACTTGCTGcttttaagtcatatttatcATTCTCAGTAATGCACTGATTTTAtatagattgtgtgtgtgtgagtgagtgagtgagtgagtgagtgagtgaaaataaGTGGTTTGGAGAATGTGTTTGTACGAGAGTGAGTGAATATGAGTTTatggggaatgtgtgtgtgagagagatgggGATATCAGTGGACAGACTGTTTACAGGTCACTTCTGGTGATAGGAAGAGAGACCAAATAGTTACGCTTTTGGGGGGAAACTGGGGGGGTTATGTGAGGGCTGATGAGACTATGTGTTGATTATAAGCGTCTGCACTGGATTCACGTGCACAGCACCGCACAGAGAACGGCCAGGAAAAATATTGCGTCACTGCCAGGAAAAAATATTGATTGGTTTGCATGAAGAACATCCTGCCTGACTCCTGCTCTGTTCACAGTCTGGTGTAATGGCCTGGGAAACTTTTGGGTAGTTGACATTTGTCTactgtttctctttgtgttcCAGGCTCTGTTGGTCATTCTTGTTTGTCGTCTCTGTCTTCTTTTTAACAATGTTTTCGCTATGGGGTTCATTTTTGACGtttgtgaatcagtgtgtgaatgtaaagaAGGAAGTTTGTAATACTACTTTCCTGTTTGTTACTGTTGTTTGCTTCTTTTACCACTTGTCCTATTTggttaataaaatgcaaaatattattCTGAGAAGTAGTTGAAGGAAA

Function

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0043249 erythrocyte maturation biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005576 extracellular region cellular_component
GO:0005128 erythropoietin receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05437 EPO; erythropoietin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74949 lncRNA upstream 368493 12357832 ~ 12358248 (+) True G63242
TU74948 lncRNA upstream 369060 12355550 ~ 12357681 (+) True G63241
TU74788 lncRNA upstream 431618 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU74814 lncRNA upstream 476953 12248663 ~ 12249788 (+) True G63137
TU74720 lncRNA upstream 722518 12003990 ~ 12004223 (+) True G63061
XR_003404040.2 lncRNA downstream 35107 12768585 ~ 12772822 (+) True LOC113540557
TU75255 lncRNA downstream 37248 12770726 ~ 12772803 (+) False LOC113540557
TU75285 lncRNA downstream 68416 12801894 ~ 12834330 (+) True G63547
XR_004577946.1 lncRNA downstream 189392 12922870 ~ 12926987 (+) True LOC117596991
TU75450 lncRNA downstream 385990 13119468 ~ 13119677 (+) True G63685
XM_026937058.2 mRNA upstream 10009 12712841 ~ 12716732 (+) True LOC113540507
XM_026937059.2 mRNA upstream 10009 12712842 ~ 12716732 (+) False LOC113540507
XM_034304097.1 mRNA upstream 56200 12508874 ~ 12670541 (+) True nlgn2a
XM_026937160.2 mRNA downstream 8779 12742257 ~ 12767904 (+) True gigyf1a
XM_026937280.2 mRNA downstream 43699 12777177 ~ 12788225 (+) True wrap53
XM_026936981.2 mRNA downstream 62463 12795941 ~ 12861217 (+) True efnb3b
XM_026935904.2 mRNA downstream 217591 12951069 ~ 12976437 (+) True serpinh2
XM_026936299.2 mRNA downstream 247371 12980849 ~ 13115167 (+) True dnah2
TU74787 other upstream 431618 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_003403980.2 other upstream 1029446 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 2063334 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 2161017 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 2195213 10531456 ~ 10531528 (+) True trnak-cuu_20
TU75687 other downstream 684899 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 737291 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 825145 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 972098 13705576 ~ 13719454 (+) False gc2
XR_004578085.1 other downstream 1522266 14255744 ~ 14269340 (+) False brms1

Expression Profile