RNA id: XM_026936027.2


Basic Information

Item Value
RNA id XM_026936027.2
length 4669
RNA type mRNA
GC content 0.44
exon number 16
gene id mtmr1a
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17308621 ~ 17329546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgttagggttagatttGGGTGTAGGCATAGCTTTAAGAATTATTTCAAAGGAAGGTCCTCAGTAAGATAggaagacgtgtgtgtgtgtgtgtgtgagaggcagagagagagatgatttcCTCGCCATAAGTAAACGGAAGCGCTTTTTGTCAGCAGCATAATAGCAAAAGCACTCCAGGAAGCGATGACGGCGTTTCCTTCATAAGGGAGGGGAagaagagcacacacacacacacacacacacacactgatagccGACTGCCTCCCCTTCTGCACAGAGAGATAAAGCGATAGCGACAAACATTCAGGAGACAGGAAGCGGAAAACATGGAGAAACAGGCGTGTTCTGGCTCCGAGAATCCCGCGATACCGCCGGTTCCGAGGAAGCCGCGGGCTCTGGGAGTAAACATCGCGCCTCGACAAGACAGCAGCGACTCGGTGGACAGccCCACAGGCTCTCATGTTGAATGGTGTAAACAGCTGATTGCTGCCACAATCTCCAGCCAGATCTCAAGCTCCGCTATTCCTGAGATTGTGAACCGTGACTGCAAGGTATCCAAGAGGCCTAATTTGAGGCAGGCATTTAAAGACATGCAGAGGCCAGTTCCCATGGATGAGGTTCCACTAGTCCCTGGGGAGAGCATTAAAATAACTGCTAAAGATGTGATGTATATCTGTCCGTTCACTGGAGCCGTGACAGGCACGCTCACAATCACCGACTACAAGCTTTACTTCATGAGTCTTGAGAGGGATCATCCCTTTGTGCTGAATGTGAATTTGGGAGCGATAAGCCGGTTGGAGACCATCAGTGTTCAGAGTCATGGGGAGAATACGCAGGGAATGGAGATCGTCTGCAAGgACATGAGGAGTCCTAGGTTTGCCTATAAGAAGGAGGAACAGAGCAAACTGGAAATTGTCGAGACACTTACCAAGTGCGCCTTCCCGCTGTTCAATGATCTGCCCCTGTTTGCTTTCCAATACACGGAAAAGTATCTTGTAGAGGGATGGAAGGTTTATGACCCAGTATCAGAGTACAAGAGAATGGGTCTGCCCAATGAAAGTTGGACTATCAGTAAGATAAACAGTAATTATGAAGTGTGTGACACATATCCTGCACTCCTGGTCATCCCAACTAGTATCAAAGATGACGAGCTTAAAAGAGTGGCGGCTTTCAGGGCCAAGCATCGCATACCGGTCCTCTCTTGGATCCATCCTGAGAGTCAGGCCACGATTGTGCGCTGCAGTCAGCCGCTGGTGGGCCCCTCAGACCGCCGCTGCAAAGAGGACGAGCGCTACCTGCAGACCATCATGGATGCCAACGCACAGTCACACAAGCTGAGCATATTTGACGCAAGGCAGAACAGTGTCGCTGACACTAATaagGCTAAAGATGGTGGCTATGAGAGCGAAAGTTTCTATCCCAATGCGGAGCTGAATTTCCTGGATATTCCCAACATCCATGTGATGCGGGAGTCTCTGCGCAAGCTGAAGGAGGTGGTCTACCCCACCATAAACGAACCTCACTGGCACTCTGCTGTAGATGCCACGCACTGGCTGGAGTATATcaggctgttatTAGCAGGTGCAGTGCGTATAGCGGATAAGGTTGAATGCAGTAAGAGCTCGGTGGTGGTGCACTGCAGTGACGGCTGGGACCGTACGGCTCAGCTCACCTCTCTGGCCATGCTGATGCTGGACTCGTACTACCGCACGCTCAGGGGCTTCCAGGTGCTGATCGAGAAGGAGTGGATCAGCTTCGGACACAAGTTCGCCTCGCGTGTTGGCCATGGAGATGAGAATCACGCCAACTCTGAAAGATCCCCTCTCTTTGTGCAGTTCATCGACTGTGTGTGGCAGATGATGAGACAGtttccTTCTGCCTTCGAGTTCAATGAGCTTTTCCTCATTACCATCCTGGACCACCTCTACAGCTGCCTGTTTGGTACATTCCTCTACAACAGTGAACAGGAGAGAGTGGAAAAGGAAGTACAGACTAAAACGATATCATTGTGGTCCTACGTTAACAGTCAGCCGGAGGACTTTACTAACCCGTTCTATGTGGACTATAAAAACCAGGTGCTGTATCCACTGGCCAGTCTCAGACATCTGGAGCTCTGGCTGGGTTACTATGTGCGCTGGAACCCACGCATGAGACCACAGATGCCGGTCCATCAGAATTTGAAGGAGTTATTATTTTTGCGTGCTGAGCTACAGAAGAAAGTGGAGGAGCTCCAGAGAGAGGCCACGTCATCACGCTCCATCTCATCTTCAGAACATGCTTCTTCCTCCTCTCATGGTGGTACACCACTTCACACTgctgtctaaacacacacacacacactcgcacaacATATATTTAAGAGCACATACTGTGTTTGCTCAGTGAATACATTCTCAGGCACAAGTAGGGAGTGGATGAGAATGAAGtgggcagacacacacacacacacacacacacacacacattcctgtttgtgtttttttaactataGAGAAGTAACCTAGTGTCGCATTTTATAAATCCATTTTTTATAAACTGTGAAAAATCTATCTTGTAATGATAGTCAGCATGTCCGCAGCATGAATTCATAGTATTCACTATCTAGTGTTTGAcctgtaaatatgaaaaaaaaaaatgtattaatatatttgtaCTGCATTTTAATCTTTCCCTGTGGCTTCATTTGCTCCTCTGTGCCAACTCCTGTTCATGTTTTAACTTCTGAATGCAGCTTTTAGCTACGTGAagttcttttaaattttttaaattaataattcttctatttttgtattttattagttACTTTCCATTTCATGTCCACTTTGTCATCACACTGAAACTTGACAGTTATTTCAGTATCATTTTCTCATAGATCTGTCTTTCATGTTGCTAATATAGAGAAGCACtgaataaatagtaaaatgtgttttagtaTGAAGGTGTTAAAATGTTGAGTTGTATGCCTCAGTACAGAGCCATTCCTGCCTCATGGACTTGTCACTGGTATTGTTTGAATAAATTTAACTGGTAATGAAAAGTGTTGTCAATGATAGGGAAGCAAAACAGAGACTTAAAGATTTGAATTTTACAAGCCATTGAATCTGATAATTAAATTTATACACTAATGAATTCATATCATcatagcatgtttttttttttaatcacacatctgtatttatttgttttgaattaaCTTCATTGAAATTCAAAGACGTCTTTTTCAAAGTTCACATATTCACGTTGCTCGTTCCAGTGCTCAGATTCAACCAGCAAAATTCactttgaaaataaatacaggTCGAGTATCAGGGCTGCCCAGGAACAGGCAAATGTAGACGAGTCTGGAATGAGAGACCATGTTCAAAAGACCATCTGAATAtaggtgcttgatttttttGAAAGCATGAATTTGAATATGTGAacacaggggggaaaaaaaaactccttagACTTTCAAGgaggttaataaaaaaattaaacataaagatCTGTACATGTCAAGGTATTATTTTTCAATGCTATGAATCCATTGGTGTTTGAATTGGATGATTTACATACTGAATGATTGTCTCGGTGGTGCTTCCATACATACTGCTCTGTAAAGGGTAGTGAAAGTCCACTGGTGTTTCATACATGAACCATTCGATGTAATGAAGGGTGAACTGTGAATCATCAGTGCAGAGCTGGAACTGGAGGCGTGTTACACTTCTCATAGCAGCTACCAGATTTTAGTTACGTCCCTTACTTACAAGATGCCCCAGTAGAACGTCTTTTATCTTTCAGTGCAAACAGGAAAAAGGGTGCCAGTGGAATATAATCAGTGAATTAAGGATCACAATGCAACTCAAGGTGCTGtagagggacacacacacacacaacctttgcactttgtgtctgtatttttaTGCTTATActatacactcaccagtcaTTTTAATAGTAATGCCTGTATACCTGTTTATTCATGCGAATATCCAATCAGCCCATCATGTaacagcaacacaatgcatgaggttcaccgaaactggacagttgaagattgttGAAACTGCTCTTTTTCCTGTCCTCAATCATCCAGTTTCAGTAAGGCTGTGTAGCCCCAAATTCCTGATTCCAGGTTCTTGGGtaacaggagtggaatccaATGTTTTCTACTGTTCTCAATGTTTGgcatgctgtgcattctgagatgcttttctgctcaccatgtttgtaaagagaGCTGATTTGAGGTTACCATGGCCTTTCTATTAACTCAAACCAGTCCGGCTATtctcctctaatctctctcaACAACACGGTGTTTCCACCCCCAGAACTGCCGCTTACtgtggaaatcccaggagatcagcagtttctgaaatactcaaaccagcccatctggcatcaacaaccatgtcacagtcaaagtcactggattacatttttctccattctgatgtttgatgtgaacattacctgaagctcttgatctggtcctgcttgattttatgcactgtagataattgcatgaatgagcagatgtacaagTGTTTATATTCAAGTGATCAGTGAGCACATCTCCTATCCAACATTGAGGTTTTTTGGGACAATACTTAACAATGTACCTGACTTTGTTCTAAGCTTCTGACAttccagtgaaaaaaaaataaaacaatccaagtcaaa

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77765 lncRNA upstream 537780 16770605 ~ 16770843 (+) True G65663
TU77754 lncRNA upstream 545162 16758260 ~ 16763461 (+) False LOC113539905
TU78081 lncRNA downstream 5951 17335497 ~ 17392798 (+) True arrb2b
TU78094 lncRNA downstream 27792 17357338 ~ 17372139 (+) True G65938
TU78095 lncRNA downstream 28940 17358486 ~ 17359569 (+) True G65939
TU78075 lncRNA downstream 73013 17402559 ~ 17403879 (+) True G65927
TU78076 lncRNA downstream 73013 17402559 ~ 17403855 (+) False G65927
XM_026936036.2 mRNA upstream 753 17279486 ~ 17307870 (+) True mtm1
XM_026936037.2 mRNA upstream 753 17279488 ~ 17307870 (+) False mtm1
XM_026936038.2 mRNA upstream 753 17279501 ~ 17307870 (+) False mtm1
XM_026936021.2 mRNA upstream 33441 17208503 ~ 17275182 (+) True si:ch73-211e3.1
XM_026936043.2 mRNA upstream 119171 17185021 ~ 17189452 (+) True LOC113539921
XM_026936053.2 mRNA downstream 22373 17351919 ~ 17401388 (+) False arrb2b
XM_026936020.2 mRNA downstream 75807 17405353 ~ 17419302 (+) True pelp1
XM_034303561.1 mRNA downstream 97123 17426669 ~ 17500896 (+) False alox12
XM_034303560.1 mRNA downstream 97148 17426694 ~ 17438271 (+) False alox12
XM_026936030.2 mRNA downstream 157877 17487423 ~ 17500896 (+) True alox12
XR_003404112.1 other upstream 546748 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 546976 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 547285 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 547516 16760981 ~ 16761107 (+) True LOC113540745
XR_003404111.1 other upstream 547804 16760749 ~ 16760819 (+) True LOC113540741
TU78354 other downstream 280158 17609704 ~ 17620079 (+) True LOC113539940
trnat-agu other downstream 434915 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 670612 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 783898 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 867766 18197312 ~ 18208564 (+) True G66492

Expression Profile