RNA id: XM_026936045.2


Basic Information

Item Value
RNA id XM_026936045.2
length 1717
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC113539922
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17648230 ~ 17651920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGGGTGCCATCGGCTGGAACAGCGGAGCCTTCTACTTGCCCTGAAACAACAGAACAGGTTAAATACAGAACTGGATTTTTTGGCACTTCAGAAGAAAGTTCCTAAATGGTCTCTGCATCAGTGCTGTGCTTGCTTTTAGATACAAAACATGATAAAGTTTTTGAGGAGGTGTGTGGTGCAGCGGGTGTATCTGCAGGTCCAAAAACAGAGACGTGaggaacaaaacaacaaaataccAATGGAACTATGGGCAGAAGTAGCACAGAAAATGGCTGGTGTCCATGAGGAAACAATATCTTCTGCCTTCTCTCAAATGCTGGTAATTGCTGCCACAGAGCCCTGCAGCCTCCACCACTCAGATCCTCCACGTACCACAGACTCTCAACGTACTCTAGCCAGCGGCTTGCGCACTATACCCCTGAGGCCGATGCCTAAATCCCATGCTGGCTCGCCTCCTCCAGCGATAATTCTGCCTGGACAAGCCTCTAAAACCCCTCAGTCACATGGGAAGGATGCAGCTTCCAACCCCTCTGCCCAAACCACCACAGTAACATCTCCTTCTGCCATTGCTGAAGAGGATCATAGTGAGTTACAACAAAAAACTGAGGCAGACAAAGACTCTGCCATGCCTTCCACATCAACCACCCTTAAATCACTCCTGAGTCAACCTGTCTCAAAACCAACGCCATCACTGTCTGCTTCAAGTGCTGTGTCTACTGCTGCACCCTTGCTCACATCAGACATTGATAAGCAACCTGAAAGTGGACAGTCTGAGCAAGCCTGGCAATATAGACCAATGGGGATGAAGAGTGTAGTGGACTTTGAAAAGATATACCAATTTATAAGCAACATCATTCTCAAAAAACACACTCAGCCTCTTACTGCTATGGAAAGTGCAGTGCTTTTGGACCTGTTGATGTCTTTGCCTGAAGAGCTCCCCTTGCTGGACTGTAAGGAACTGCAGCATCATCTGCTTCAAGTTCACACCCATCTGAACACACCAACAGTGAGCCACAGCACAGATCAGGGACCTGCAGTTGCTAATTCTGCTTCAACTAGAGTAACAGAACAGCAAATTTCCAGAGCTGACAAACATGCTAAAGGACCTGATGTTTCTTTACAAACACAGAGTGTACCATCTACAGGGGAAGAGAGTGTTCAAAAGGGAGAAGTAACTGAGCAAGCAAAGGCTACAGAATCACCATTAGCTGCTGGAGATTTTCCAGGCCAGTCACCTGCAATGAAACTGTCAAAAGACAAAGGTGATTGGGCCACTGCTGGCTTGTGTCCACTAAATCCATTCATGGTGCCAGTAGCCCTCCTGAAACGGCAGTAACCCAAGGAGAGTGCAAAAGCAgctgtgtttttctgatttCAGAACCGTTGATGCTGACAttggtgttttaaaatgatttcatttagAAAATAATATACACCTGCCTTGTTTCAAAGTGCATTGAATGTGATGACATCAGTGAAATAACCTTACATAATTTAATGAAGCTTGTTAGTACAAATTAGGCCTTTAGTATACATTGCACTGAAGACAAATTTTACATATTTCTGATGCAGTAGTGAAGTGGGAGTACACAAgaacacatttaatttataaatgtgatgGATTCACTATTTgaagtttttgtctttttagttaCTAAAGGACACTTTTGTGCACatagttgtgtttatttaataaatatctatTTTTTAGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78544 lncRNA downstream 10244 17571331 ~ 17637986 (-) True G66274
TU78558 lncRNA downstream 10244 17574943 ~ 17637986 (-) False G66274
TU78577 lncRNA downstream 13362 17593748 ~ 17634868 (-) False G66281
TU78579 lncRNA downstream 13362 17593748 ~ 17634868 (-) False G66281
XR_004577990.1 lncRNA downstream 55760 17591839 ~ 17592470 (-) True LOC117597047
TU78612 lncRNA upstream 34928 17686021 ~ 17686234 (-) True G66310
TU78613 lncRNA upstream 35793 17686886 ~ 17687098 (-) True G66311
TU78620 lncRNA upstream 45684 17696777 ~ 17701254 (-) True G66318
TU78672 lncRNA upstream 148029 17799122 ~ 17812526 (-) True G66349
TU78673 lncRNA upstream 150573 17801666 ~ 17809014 (-) True G66350
XM_026936033.2 mRNA downstream 95090 17540590 ~ 17553140 (-) False ache
XM_026936034.2 mRNA downstream 95090 17540590 ~ 17553140 (-) True ache
XM_026936035.2 mRNA downstream 95343 17540590 ~ 17552887 (-) False ache
XM_026936075.2 mRNA downstream 111457 17533165 ~ 17536773 (-) False zgc:92664
XM_026936078.2 mRNA upstream 86683 17737776 ~ 17747135 (-) True ap1s1
XM_026936055.2 mRNA upstream 96862 17747955 ~ 17751639 (-) True serpine1
XM_026936054.2 mRNA upstream 96862 17747955 ~ 17751619 (-) False serpine1
XM_026936046.2 mRNA upstream 114055 17765148 ~ 17769886 (-) True zgc:77439
XM_026936047.2 mRNA upstream 114055 17765148 ~ 17769226 (-) False zgc:77439
TU78578 other downstream 13362 17594449 ~ 17634868 (-) True G66281
TU78241 other downstream 204056 17439493 ~ 17444174 (-) False rnaseka
TU78232 other downstream 245766 17400594 ~ 17402464 (-) True G66053
TU77801 other downstream 1042513 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 1225066 16419310 ~ 16423164 (-) True tnfsf12
trnas-uga other upstream 120057 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 141133 17792226 ~ 17830126 (-) False map11
XR_003404075.1 other upstream 264537 17915630 ~ 17915771 (-) True LOC113540701
XR_003404117.1 other upstream 1365730 19016823 ~ 19016953 (-) True LOC113540749
XR_003404118.1 other upstream 1366177 19017270 ~ 19017400 (-) True LOC113540750

Expression Profile