RNA id: XM_026936047.2


Basic Information

Item Value
RNA id XM_026936047.2
length 1662
RNA type mRNA
GC content 0.49
exon number 7
gene id zgc:77439
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17765148 ~ 17769886 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATGTGTGTAGGATCATGGCTGGCTTGCAGAAGCTGCGCGTGGCCGTGGTGGGCGCAGGGGCGGCGGGGCTGTGCGCCGCACGTCACCTCCTCGCGCGCCAGGACCTGTTCGCACCGCCGGTGATGTTCGAGATCACCAAGCACGTGGGCGGCACGTGGGTTTACGAAGAGCGCGTGGGCCGCTATGACAACGGCCTGCCTATCCACAGCAGCATGTACAGGGACCTCAGAACCAATATTCCCAAAGAGGTCATGTCATTTCCTGATTTCCCCTTCGCAAAGCATCTTCCTTCGTTTGTCCATCATACAGAAGTGCGCAAGTACATCGAGCAGTACTGTGATCATTTCCGCCTTTGGGACCACATCAGGTTTGGCACGAATGTGGACGCAGTGGACCCAGTAAACGTGAAGAGTGGCTGGAAAGGTTTGGCATGGGACATCACCAGCAGTGATAGTGTGGACCGGAGCAAATCCATCACAGAGCGCTTTGATGCTGTTATGGTGTGCAATGGACATTTCTTTGACCCGTACATCCCTGATATACCTGGACTGAAGAAGTTCAAAGGTATGTTGATGCATAGCCATGATTATCGGAGTGCAGAGCCCTTCGCAGACAAGTCAGTGCTGGTGCTCGGTGCTGGTCTTTCTGGGCTGGACATTGCTATGGAACTCGCCAACGTCAATGCTAAGGTGATCCTAAGTCATGGTCAGAAGCCCCTGACTTGCCCCATGCCCCAGGGAGTGGAACAGGCTCCTCCAGTAAGCAAAGTGCTGGAGGATGGCACTCTGGAATTTCAGGATGGGAAGCAAGCAGAGCCAGAGGTGTTTTTGCTCTGCACAGGCTATAACTTTGTCTTCCCTTTTCTGAATGAGCAAATCGGAGTGCAGGTGAAAGAGCACTTGGTCTATCCTCTCTACAAGTTTCTGATACCTCCTGCCTATCCATCACTCTTCATTGTAGGCATCTGCAGAGCCATATGTCCCTTTCCACACTTCCATATACAGTCTCAGTTTGCCATCTCTGTGCTGGATGGTTCGTTCTCCCTCCCCTCACGTGAAGAAATGGAAAAGGATTTTGAGCTGGACGTGGCTGCTCGTCGAGCTCGTGGTGTCGCCACCCGACACATCCTCAAACTGGACTCTGAACAGTGGGCCTATAATGACCATTTAGCCCACTTGGGTGGCTTCCAGCCCCTTCCTCGCTACTGGAGCAATCTGTATGAGTCCAACAAGGTTTTCCGTACCCGGGATATGCTCAACTATAAAACCTACAACTATAATGTACTCAGTGAGACAGAGTGGATGGTGCAGAATCTGCAAGGACAACAGGTGGAAAAACCACAACTTAAACATATATAATTAGATCAGTGAAGGCATTTACTATGCACCCTTcaattgaaaatgaatgtaGTAGCTTATTACtatatttgagttactgtgtCAAATTAGTACTTTCTGACTACTGGTATTAGAGACTGATGCCAGTTTAGCAACTTGAACTACTCAGGGCTCAGTGCCACAAAACCAACACAGCAGGGGGTACCATTTATATAATAGAGTGAGCATCTCATTAAACGTTTTCTCTACCATTTTACATGATCTTACCTTTATTATGGTTATAGATAACTCGGCCATATAcattaaaagaaattttaaaaaata

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0004499 N,N-dimethylaniline monooxygenase activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78620 lncRNA downstream 63894 17696777 ~ 17701254 (-) True G66318
TU78613 lncRNA downstream 78050 17686886 ~ 17687098 (-) True G66311
TU78612 lncRNA downstream 78914 17686021 ~ 17686234 (-) True G66310
TU78577 lncRNA downstream 130280 17593748 ~ 17634868 (-) False G66281
TU78672 lncRNA upstream 29896 17799122 ~ 17812526 (-) True G66349
TU78673 lncRNA upstream 32440 17801666 ~ 17809014 (-) True G66350
TU78678 lncRNA upstream 94784 17864010 ~ 17864883 (-) True G66355
TU78732 lncRNA upstream 245918 18015144 ~ 18020809 (-) True G66387
TU79023 lncRNA upstream 617335 18386561 ~ 18386990 (-) True G66651
XM_026936055.2 mRNA downstream 13509 17747955 ~ 17751639 (-) True serpine1
XM_026936054.2 mRNA downstream 13529 17747955 ~ 17751619 (-) False serpine1
XM_026936078.2 mRNA downstream 18013 17737776 ~ 17747135 (-) True ap1s1
XM_026936044.2 mRNA downstream 113228 17648230 ~ 17651920 (-) True LOC113539922
XM_026936045.2 mRNA downstream 114055 17648230 ~ 17651093 (-) False LOC113539922
XM_026936039.2 mRNA upstream 57414 17826640 ~ 17839915 (-) True map11
XM_026936040.2 mRNA upstream 73928 17843154 ~ 17853369 (-) True gal3st4
XM_026936071.2 mRNA upstream 99401 17868627 ~ 17870914 (-) True her8a
XM_034303566.1 mRNA upstream 105941 17875167 ~ 17880384 (-) False LOC113539930
XM_026936061.2 mRNA upstream 105941 17875167 ~ 17880384 (-) True LOC113539930
TU78578 other downstream 130280 17594449 ~ 17634868 (-) True G66281
TU78241 other downstream 320974 17439493 ~ 17444174 (-) False rnaseka
TU78232 other downstream 362684 17400594 ~ 17402464 (-) True G66053
TU77801 other downstream 1159431 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 1341984 16419310 ~ 16423164 (-) True tnfsf12
trnas-uga other upstream 1924 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 23000 17792226 ~ 17830126 (-) False map11
XR_003404075.1 other upstream 146404 17915630 ~ 17915771 (-) True LOC113540701
XR_003404117.1 other upstream 1247597 19016823 ~ 19016953 (-) True LOC113540749
XR_003404118.1 other upstream 1248044 19017270 ~ 19017400 (-) True LOC113540750

Expression Profile