RNA id: XM_026936051.2


Basic Information

Item Value
RNA id XM_026936051.2
length 2233
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC113539925
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17889483 ~ 17893961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aACAGAGGAAACGATGAATCAATCTTGGGAAGAATATTCTTTTGcctagaaaaaaagaagaacagactCTTCGGGTGAAAACTCATCACCAGTCTCTCAGACAATGTTTCCCATTGATTGGCGAAGCCTGCCACCAAAATTGTCACAGGAATTCCCAGAGAAGGCAACAGCTGCACAATCTGCCCCCTGGAGTAAGCCTACTCTCAGTAATAAGCCTGCCCTGGGGCGAATGCAAAGCCTGGAGGAATGTTTTCAGTTGCTCACAGACATGGCCAAGGAGCTAGAAGATATCAGCAAGGGCAGAAATAAAAGCACACTGGAAAGGTACAAGAAAGTTTCAGGAGAAGACTCTGTGCCAGGAGACGTGGAGAGCAGCAAGAGTCTCATTCTGTCATGGGCTAAAGAAATGGACACGCTCAACATGTCAAGAggagtgaaaaagaaagcatCCTTGAAAGCAGAGGTTACACGAATGAGCAATAACGATGTGTGTGATTTCTCAAAAGACAGGGAGAGGATCATGAAGTGGGCACACGAGTTACAGACTGTCACAGAgaaccTGAGTCTGTTAGATGGAGACTTAAAGCAGATTCTTACTAACCACAGCAAAATGAATAGAAAAGTAGATGAAGTTCTTCCCTTTCTGGAGTTTGTGGTCTGGTCTCTTCTCTCACGTGACTCTGAGgagGATCTTTCAAAAATATGGTTGCCAGCTAAGCAGAGAACATGGAAGACAAGCAGCCAGAAATATATTCCTAATTCAGTTTGGCAGTGGATTCAGAGTGCCTCAGTGGCTGTACATCTAGATTCCAGTTCATGCCACCCCTGGCTGCATGTGTCAGAAGATAAACTGAAAGTGTATGAATTGCCCGAGGCCCCTCGAGGGCAGCAGTGGGACAACCCTCAACAGTTTGACAAGCTGCCGTTCATCCTAGGGCTCAACGGATTCTCCACTGGGAGACACTATTGGGAGGTGGAGGTACCAGCAAAAGGAAAATGGAGGTTAGGGGTAGCAGCTGCATCTGCTCAAAGAAAAGGCCGCTTCCACATTGCTCCAGGAGCAGGGTACTGGACTATTTGTCACAGGTCTGAGAATCTCCAGGCATGCACTGATCCCCGTATCGAGCTACCAAATTCTGTACCTCTTCAGGTGGTTGGGGTTTATGTGGACTGTGAGGAAGGACAAGTGTCCTTCTATAATGCTAACAACAGATTCCATATCTACACTTTCACACAGACTTTCAGAGAAGTGATTTTCCCTGTTTTTGCTTGTCTGGATGGGAACACTGTGCTAAAAATCTGTACATCATAAATCTGTATTTGATGAAAAGCAAAAACTGATGCAAGTTCGAGAGAACTTCAACTGCATACACCACTATTTCTCTGTCCCTAAAATTGCaatgtgcacaggagcattgtcatgctgaaacaggtttgtgccccttagttccagtgaagggaaattgtaatgttataggctacaaagacattatatacaattgtgtgcttccaaatttgcggaaccagtttggggaagaaccacatatgggtgtgacggtcaggtgtctgcaaacttatggccatatagtgtatatgttgGAGAGTTGTATCAGCCTGTCTCTTACCAGTTGAGTTGAGGTGGACaagagaatatgaaaaataaggAACTGATTATACAGACTCGAAATTTAAAGTGGAACAGCACTTATAGTTGTGTTGGAGCTCCTAAACGTGTTAttcaatcataataataatattaatcaatTATAAGTAATGATGTCACATTAAGATGTTAATcactaattataattaattatgttACTGAAGTATGTTAATCCATATTAACATATGGGACATATTAACACATATGTTAAACCAATTAGTCcattatattactgtatattgttaTTCTGTTTACTCAATAGTATATGTAGttattttagatcaaatctatttatagttgcaaaaaaaatatgcttGAAAACATGTTTATTCCAGAGGTGGTAAGATGTTGGGTCAGAGTGACATATGAACTAATATACTGATTTGATGTATTTGTTACATAAAACGAACTGATTCCTGATTTGGTAATTTTAAGTAATTATTAGCATCATTTCAGCTGACCAAATGTGTAAGTTAAAGCATAAAGGTGATAGAAAGTAAATACTTTTGCAGTTAtaattttcctttcttttctcttttccttatatttactttaaacctttttttctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78468 lncRNA upstream 12453 17873399 ~ 17877074 (+) True G66214
TU78431 lncRNA upstream 114218 17772553 ~ 17775309 (+) True G66179
TU78387 lncRNA upstream 142362 17740075 ~ 17747165 (+) True G66159
TU78379 lncRNA upstream 186072 17703234 ~ 17703455 (+) True G66151
TU78365 lncRNA upstream 237817 17649365 ~ 17651710 (+) True G66144
TU78405 lncRNA downstream 10651 17904611 ~ 17919097 (+) True G66169
TU78403 lncRNA downstream 17634 17911594 ~ 17919097 (+) False G66169
TU78438 lncRNA downstream 80038 17973998 ~ 17975359 (+) True G66186
TU78493 lncRNA downstream 96475 17990435 ~ 17992247 (+) True G66237
TU78533 lncRNA downstream 197628 18091588 ~ 18096583 (+) True G66263
XM_034303838.1 mRNA upstream 63001 17784990 ~ 17826526 (+) True zanl
XM_026936031.2 mRNA upstream 163118 17722149 ~ 17726409 (+) True vgf
XM_026936079.2 mRNA upstream 187204 17700478 ~ 17702323 (+) True LOC113539938
XM_026936056.2 mRNA upstream 191256 17694648 ~ 17698271 (+) True LOC113539928
XM_026937074.2 mRNA downstream 940 17894900 ~ 17899493 (+) True mpdu1b
XM_026936444.2 mRNA downstream 42886 17936846 ~ 17950388 (+) True tnk1
XM_026936445.2 mRNA downstream 72364 17966324 ~ 17968311 (+) True LOC113540162
XM_026935857.2 mRNA downstream 98680 17992640 ~ 17998216 (+) True elp5
XM_026935856.2 mRNA downstream 106198 18000158 ~ 18010962 (+) True ctdnep1b
trnat-agu other upstream 124993 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 269448 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 1127652 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 1127880 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 1128189 16761266 ~ 16761338 (+) True LOC113540743
XR_003403977.2 other downstream 106198 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 219484 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 303352 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 962496 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1934351 19828311 ~ 19828382 (+) True trnah-gug_4

Expression Profile