RNA id: XM_026936064.2


Basic Information

Item Value
RNA id XM_026936064.2
length 3727
RNA type mRNA
GC content 0.42
exon number 11
gene id cd99l2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17329547 ~ 17343282 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtggagtgggtGAGGGAGAGGATCCGCCCTGTGAGCGCCGCTAACGTGAATCTCGCCACTTCTCGCTCACTCACACTGCAGCGGTTTGGTGCAGCGGTTTGGACTCTCGTCTGTCCTTCAGTCTTACAGCTCCTCTGGCTCTAACTCAAACAGAAAAGCTTCCTGGCGCAGACACTGACAGAAACCACTGCCTTTGAACCATGAGGAGGTTTTCGGTGTGGCCTCTTGTGGCCCTTTTCTCGCTGTTAGCACTGAGAGGTCTGGCACAGGATCTCAGCCTGGCTGATGCtttagatgatgatgatgacaagcCACCGTCTCCTACTCCAAAACCCAAGGCAAATGACCAGCCTGGAGGAGCTGGTACAGGTGGAGGACTTAAGCTTGAAGACTTTTTTGATAAACCTACCGAAAAGCCTGCTGTCAAGCCCAAAGACCCTGTCAAGCCCAAAGACCCTGTCAAGCCCAAAGACCCTGTTAAGCCCAAAGACCCTGTTAAGCCCACGACCAAACCCAAACAAGGTCTACCTGACTTTAACCTTGCTGACGCTTTGCTTCCTGAAAATGACAAGAAAAATCAAGAGGACAAAGACTTTGGAGGAGGTGACAACAGGCCCAGCACCCATGGTGGAAACGGTGGAGGACAGTTTACAGATGATGACCTAGAAGACTTGAGTAAAGGTGGCCGCTACCATCCTGACAAAGGGAAAGgagGTTCCGGTGGTTCCGGAGGTTCAGGTGGTGTTGTGGACCCTGCTGATGACGGTGATTATGACAGCATGGCAGAGACTGGCACCATTGCTGGTATTGTAAGTGCTGTTGCCATGGCGCTGGTTGGTGCAGTCAGCAGCTATATCTCTTACCAGAAGAAGAAGTTCTGCTTCAGCATACAGCAGAGTCTGAATGCAGATATGGTTAAAGCTGAGAATCCAGAAGCCGTCGTGGCTCAGGAGCCTCAAGttCAGCAAACTCTCCTCCAGCCCCCCAATGCTGAGCCGCCCACAGAAGACAACGCGGTGTAAGCTGTGATACGTCTCCCAGCCTGAAGAGGGAGCAGTGCTCAATGCATACACGCTCTCAGTGGGGAAAAACCATCTGCTTTGTCACAAAGTCAAACTTTCTGTGAATATTTGTTTAACTGTTTGCCTTCATTGTCACTAATACGactgtttacaatattattCCTATGAAGTTGAAAATTGTGCAGAAGTTTATTGTGTTGCTAATTGAAAGTACAAACTGAGACAAACTATTCATGCATTAGTGCTGCTCCAGCTTTTTGTTTCCTTCACACGTTTGTGTGAAAGCATCACTGTGTAACTAGTGTGTATCATTAATCCACAGTCTGTGATTGGATTATCCACATAATGGTAAAATAAGTACTTCTACAGGAAAAGCTTTAGAGCACAGAAGCCTGACTGTGGTCCTGTATGATTACTGTCCAGTACAGTTTGGGAATTTTCCTGAATCACACCTTCTTTATCTCCTGGGGTCATTACTCACGAGTGTTAGGTGTGAGAAACCATCACACTGTGGATGAGTTCAGGAATTGAGGACCAGAGCCAGGCTTTCCTGATTTATAAATTGATTGTTGATGAAGGTGACCTTAAAGTAATTCCCAGTTGCTTAAAGGTTTATTATCTTTTTCAAGCACCTATTTcctatttcacattttaaaaaatgacaatgatttgtacatttgtgCCCTGCTTTTTTTCAGAGCCATGTGAATTAATTGTTGTATATAGGCAGTTTGTTTGTGCCCTGGAATTGAACAGGACTTTTGAGAAGCTTACAGAAAACTGAAGATAGCTGCTCACAgtttaatttgctttaaaaaagtgaCTGACAATTGGAAGTGAGCTTACATGTATCAAAAGCTGGTTGTGTTGAAGAAACCTTTGctaatttgttgttttgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtttactggtACAAAAATGGTAGCAGATTTTTCAGAGGCGAGCTTACTGTAATGAAGACATCCAAGTATACTTGTTTGGAATATGTAGAAACTAAAGTCTTACATGTTAGCACAAacatgttatgttttttttccttattaggGAATTTGCCGTTTTGgaattttttaaagatattgtGCTTGTAAAATGTGCTTTGTGTGTTATTCATGTTTGTACTCAAATGGTTGTATTGGTGTATCTTTATATACACTTGTAGCAGTGTAGCTACAGTACAATAGATTTTGTTAGCAGTCATATTAATAGTCATATTAAGTGTATGGGATTAGATTTTTGTCTTTGATCCACTTACATTCTATTGTCCCTTTTACAGTTTTGCTGGGTTGGCTGTGTTCCAATTGGTCTGTGTTTGGTAACTTCCTCCCTTCACTCAAACATTGTGTTTGACAAGGCTTGGTTGCGCTGTATGAACGGTTGTTTTCCTCAGCTTTGGATTTACTTGTAGGGCCCAGAGATTTTTGGAGTTTGAAGAGGAGGCAGTAAAagatttggaacacagccctgTTTTCCTTTCCGAGGTTCCCCAGTTTTTCCCGTCACCTGTCACCTCCCTGCCGAGCTCAATTCTGCTGCACCTTCTCTATCTTTTTAGCCACTAGCTGCTGATGCTTCACTTCTTAGGCCTTATCCTGTTAAGCGGCCGCACTATCGCAAAGGAGAGTTCAGTATGCTGACTGTATCAGCTTCAGCTGAATGTGTATGTGGTCGAACTCTTGGTAGGACAGTTCAGTGTATTACAGAAGAACACAGACAGAACATGCACAACGCATCATCTAAATATGGTTGAATGTCCGCTTGTACGCAACACATCAACAATGTCACGTCCTATTGAGAGTTCCAGTCGATGTTTATAATCTAAcagaatgtaattttttttattctgctgcAATTTTCTTGAACACTTTAACGTAGCATCTCTGGTGTTACTTTTggcaaaaatgtaaaacacCAAAGACAAGGCAATGACGATGTGATCTTGTTCCTTTGTGCGTTTTTGCCTCAGATTGTGGTGACTGTTCAGACTTGGTTTGTAGCGAAATTTCAAATTCACAAAGGCCTTGAAAAACGTACATTTTCAACTATTTAAAAGCAGTGCGTTCTTTGTAATTGACTGTTAAATTTCCCCGGCATGGTGGATTTTAAGGATGTACTGTGATCAGTGTGGCTACGTCTGTGAATCAAGTTATTGAAAAGGCCATGAGTTGGAGGTTGCATTTGGTTTCTAAGGAATTCTGGGCTCTTGGTGTCTTTTGGATAGGAACTGCAAAACTTTTTCTATAAGGGTGAAAACAGATGCATGCTTAGATTCTTTAGCTGTAGACAGTTTTTCTTGCTTACTGCATTGACGTATGAAGTTTGGACGGGTTCTGTAGGGAAAGAgttttctgaagtgttttggaTTTGCACTGCCAGTGAAGTGACATATTTACCACCAACACCACAGATCAAATTGAAATGTTATAGTGTAGGACTTTGCATTGTCTCACCAGTGCCTGTTCACTCCAGTCCAGACTCATTGCTGAGACATAGACTCCATCATGTGAAAGCAAGAGGTTATTTAAGATCTACTGACAATCTTCTGCTTCAGCGGTCAATTTTCTACTTGTATTTGGCATTAAAGATCTGTTTTAAGTCTCAATTCTCACTGGCAATACCTGATAGAAAGAGAttaacatgaagaaaaaacataataaaaaatactgaaaatgaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78204 lncRNA downstream 18487 17310387 ~ 17311060 (-) True G66028
TU78151 lncRNA downstream 20463 17254830 ~ 17309084 (-) True G65984
TU77958 lncRNA downstream 234346 17080164 ~ 17095201 (-) True LOC117597208
XR_004578115.1 lncRNA downstream 234391 17080215 ~ 17095156 (-) False LOC117597208
TU77937 lncRNA downstream 392127 16937213 ~ 16937420 (-) True G65809
TU78235 lncRNA upstream 59344 17402622 ~ 17403815 (-) True G66056
XR_003403988.2 lncRNA upstream 103483 17446761 ~ 17453705 (-) True LOC113539942
TU78544 lncRNA upstream 228053 17571331 ~ 17637986 (-) True G66274
TU78553 lncRNA upstream 231497 17574775 ~ 17575306 (-) False G66274
TU78558 lncRNA upstream 231665 17574943 ~ 17637986 (-) False G66274
XM_026937047.2 mRNA downstream 149906 17102529 ~ 17179641 (-) False dysf
XM_026937045.2 mRNA downstream 149906 17102529 ~ 17179641 (-) False dysf
XM_026937042.2 mRNA downstream 149906 17102529 ~ 17179641 (-) False dysf
XM_026937035.2 mRNA downstream 149906 17102529 ~ 17179641 (-) False dysf
XM_026937048.2 mRNA downstream 149907 17102529 ~ 17179640 (-) False dysf
XM_026936080.2 mRNA upstream 96199 17439477 ~ 17444188 (-) True rnaseka
XM_026936075.2 mRNA upstream 189887 17533165 ~ 17536773 (-) False zgc:92664
XM_026936073.2 mRNA upstream 189887 17533165 ~ 17536773 (-) True zgc:92664
XM_026936076.2 mRNA upstream 189887 17533165 ~ 17536770 (-) False zgc:92664
XM_026936033.2 mRNA upstream 197312 17540590 ~ 17553140 (-) False ache
TU77801 other downstream 723830 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 906383 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 1257855 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 1337662 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 1425192 15879471 ~ 15904355 (-) False tbc1d19
TU78232 other upstream 57316 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 96215 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 251171 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 427872 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 448948 17792226 ~ 17830126 (-) False map11

Expression Profile