RNA id: XM_026936075.2


Basic Information

Item Value
RNA id XM_026936075.2
length 1428
RNA type mRNA
GC content 0.41
exon number 6
gene id zgc:92664
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17533165 ~ 17536773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCTGTAGAATTTTGACCAATGAACATCGGCGAACAGGAGCGGAACCTTTATGGCGCACTAATGCCATTATTTAGttcaaaacattattatatttaatgtagaaGAACAGTAATAACCGAGTGTTTGTTTCAGAAACATCAGTGGCGTTTAAGTGAACTAACCAGGAAGCGTTGTTTCACTGAATCTGTTAGCAACAATAAAGCTGGTTGGTGAGATCTTCTCTGCAGCAGGAGCTGCTTTTACTAAACTGGGGGAGCTCACCATGCAGCTGCACCCGGTGGCAGACTCAAGTCCAGCAGGAGCTAAATGGACGGACACAGAGATTGAGATGCTCCGGTCAGCTGTTAGGCGCTTTGGTGACGACTTGAACGCACTCAGCTCGGTCATCAAGAAGCGAACAGTGGCACAAATCAAGACCACAGTCAAGCGGAAGCTTTATGAAGACAGTGGAGTTCCTTTGTCTTCTGACTCACCAAAGAAAAGTACCAAGAAGGTCCCGGTTGCCATGGCTCCCCCTCCACCACCCACAGTCATAGCTGTGCCAACATCTCAGGTTGTGGTGACGACAGGGTTACAGGGTCCTTCTACAGGCACAGCTAGCATCAAGAAGCCAAAAACAGCAGATGTTACTCTCAGTGCTCTGAATGATTCGGATGTGAACAGCGATCTGGTAGATATCGAGGGACTTGGTGACAGCTCGGCGACAAAAAAGCTCAACTTTGATCAAGaaaGTCTGAATCTTGACTCAAGTCTCATCATGAATTCCAGTGACCTGCCTCTACTGTCCCGCTGAACCTGGCTCTCTGTTCACAACCATAAActgtaaagggaaaaaaattaacattacgTCAGACTGGGCTGAACCGTCGCAAAACAGCCCAGTCCAGGAGCCAGTTTCTTTGGTTTCTACTATATAGATGGATTCTAGAACACTTATAGTTTTCATGCAAGGTCAAATCTGTAAGGCAGATGGAATGcttgtttcattttatattcattcttTTGGCCTGTTCAAATATGGTCTAAAACAGGTCAGCAATGACTTACAAACATATTTTGTCATATGACACCAATGCATAGAATAATTGTCTtataaattcttttaaaataaaattttatatgttGGTTTCATGTAAATGAATATATTCctttaatgcattaatttttgTTATATTGGGAATCTGTTCCTCTGACAAATGTGTCTATGAATACATGATAATGCTATTTTCCTGTACTGTTTGTCCTGGTGTCAACTTATGCAAGTTCTAACTCGAGATTGTCCATTATGTCAGATTGATAGAAATCTGCATGCATTCTGCACATGATTGAGTGCAACACAACACTTGTTTACTGTTTGCTTGATTATTTGTTTGCATAAGATCACCACTGCATGTTTAAAAGGACAAATACAAACTGAAATAACTA

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403988.2 lncRNA downstream 79460 17446761 ~ 17453705 (-) True LOC113539942
TU78235 lncRNA downstream 129350 17402622 ~ 17403815 (-) True G66056
TU78204 lncRNA downstream 222105 17310387 ~ 17311060 (-) True G66028
TU78151 lncRNA downstream 224081 17254830 ~ 17309084 (-) True G65984
TU77958 lncRNA downstream 437964 17080164 ~ 17095201 (-) True LOC117597208
TU78544 lncRNA upstream 34558 17571331 ~ 17637986 (-) True G66274
TU78553 lncRNA upstream 38002 17574775 ~ 17575306 (-) False G66274
TU78558 lncRNA upstream 38170 17574943 ~ 17637986 (-) False G66274
XR_004577990.1 lncRNA upstream 55066 17591839 ~ 17592470 (-) True LOC117597047
TU78569 lncRNA upstream 55069 17591842 ~ 17592247 (-) False LOC117597047
XM_026936080.2 mRNA downstream 88977 17439477 ~ 17444188 (-) True rnaseka
XM_026936062.2 mRNA downstream 189883 17329547 ~ 17343282 (-) True cd99l2
XM_026936063.2 mRNA downstream 189886 17329547 ~ 17343279 (-) False cd99l2
XM_026936064.2 mRNA downstream 189887 17329547 ~ 17343278 (-) False cd99l2
XM_026936066.2 mRNA downstream 189889 17329547 ~ 17343276 (-) False cd99l2
XM_026936033.2 mRNA upstream 3817 17540590 ~ 17553140 (-) False ache
XM_026936034.2 mRNA upstream 3817 17540590 ~ 17553140 (-) True ache
XM_026936035.2 mRNA upstream 3817 17540590 ~ 17552887 (-) False ache
XM_026936044.2 mRNA upstream 111457 17648230 ~ 17651920 (-) True LOC113539922
XM_026936045.2 mRNA upstream 111457 17648230 ~ 17651093 (-) False LOC113539922
TU78241 other downstream 88991 17439493 ~ 17444174 (-) False rnaseka
TU78232 other downstream 130701 17400594 ~ 17402464 (-) True G66053
TU77801 other downstream 927448 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 1110001 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 1461473 16055022 ~ 16071692 (-) False acox3
TU78578 other upstream 57676 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 234377 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 255453 17792226 ~ 17830126 (-) False map11
XR_003404075.1 other upstream 378857 17915630 ~ 17915771 (-) True LOC113540701
XR_003404117.1 other upstream 1480050 19016823 ~ 19016953 (-) True LOC113540749

Expression Profile