RNA id: XM_026936078.2


Basic Information

Item Value
RNA id XM_026936078.2
length 1775
RNA type mRNA
GC content 0.39
exon number 5
gene id ap1s1
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17737776 ~ 17747135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcgcatgcgcacagGAGGCGCTGACGCTTCCTTTCCAGTCTCAATGGGGCTTTTGAATCCACCGAACTGCTAAGAGTGTGAAATAGACATGAATAATTAGTATTTTGCGTTTCTGATTAAAACGTCTTTATCGTATATTTTGGTTGAACTGGACACTCTTGAGAAGCTGAGAAAATGatgCGTTTTATGCTGTTGTTTAGCCGGCAGGGGAAGCTGCGACTGCAGAAATGGTATACAGCCACAGCTGAGCgtgacaagaaaaaaatggtGCGAGAGCTCATGCAGGTGGTGCTTGCTCGGAAGCCCAAAATGTGCAGCTTCCTGGAGTGGAGAGACCTAAAGATAGTCTACAAGAGgtatgccAGTCTGTATTTCTGCTGTGCAGTTGAAGAGCAGGACAACGAGCTGATTACCCTAGAGGTCATCCATCGCTTTGTGGAGCTGCTGGATAAGTACTTTGGCAGTGTGTGTGAGCTTgacatcatttttaattttgagaAGGCTTACTTTATCTTGGATGAATTTCTGATGGGGGGAGAAATCCAGGACACTTCAAAAAAAAGTGTACTGAAGGCTATTGAACAGGCTGACCTGCTGCAAGAGgaggATGAGTCTCCAAGGAGTGTACTGGAAGAGATGGGTCTGGCATAGAATCTACTGAGTTTTAGAAGGACAGCTTTAGGTACTACTACTGCATTTGGCGAGGGAATGGACTTTATTAGAGTATGTTTGGGGAGGGAGGGTCAAGGATGGCACGAAAAAGGACACACAGGATAGAGGGATGGTTTGAAAGTGTGTATACAGTTTTTATACTACTGAGTTCCGCATGTGATTGTACTTTTTTCAGCCCCATTTGTATTCATAATGTTAAAATAGCTGCGTCTAACCAGGACTCTCTTTCTGAAGACACACTATACAGATTATAGTGTGGGATACAGATTAGACACTTGAACTCGATACACAGCcatttatttgtaatgaaatgaaagtgcATCAAGCCTTACCATGTCAACAAAAGGAGACAATTGCACAATATGCTATTAGTCTATGAGGAGCagttatttatttctgcaaTCTCAAATTAATATATTCAGAAATACTTAGATTGTATTTTTGCTGCTCAGGAAAGATTGGCTGTAACCATTCATGCatgtctatttttaaatgtgatgcaAGATTTAAAGTAGATGACCTATCAGGCCTGAACTGCTTGCTCTGCAGTATAGGGACCACACAGtaaatctgtgtatgtgtgtgagtgtatgtgtaaaaaaagtgtgtgtatgtgtgtttatagtgagtGGGAGGCGTATCTGTGCTCTTCGCTTGCACAGTCTACCATTAAAACAGTTTTCCATGAgccagatttaaaaataaactgtgatGTGTGACATAGGAAATAGAAGAGAAATATTGAATAGGCCTTTGAGTTGGTAGAATATTGAATAGGCTGCTGCATATGGTCTATTCATTCAGTTCTAGTTCTATGAACCACATCTGCAAAGTCactgaatgtttattttaatacaagagggaaaaaatacCCACCAAATGGTACCTAACCTCTTtcctgttttgtctgtttttactTCCTGCTTTCCAAAGAGATGTGTCTGACTGTAAATGCGTAGTCTTGGAATAAAAAGggaataatatttgaataactCCTTTAAAAAATGAGGGCTTTGGCATCATGTATGACGTAGTTAggataaaaatttaaaaataaaaagttttttaatgtattgtctgaaataaaaagaatgttttgagtA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007399 nervous system development biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0030117 membrane coat cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12394 AP1S1_2; AP-1 complex subunit sigma 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78620 lncRNA downstream 36522 17696777 ~ 17701254 (-) True G66318
TU78613 lncRNA downstream 50678 17686886 ~ 17687098 (-) True G66311
TU78612 lncRNA downstream 51542 17686021 ~ 17686234 (-) True G66310
TU78544 lncRNA downstream 99790 17571331 ~ 17637986 (-) True G66274
TU78558 lncRNA downstream 99790 17574943 ~ 17637986 (-) False G66274
TU78672 lncRNA upstream 51987 17799122 ~ 17812526 (-) True G66349
TU78673 lncRNA upstream 54531 17801666 ~ 17809014 (-) True G66350
TU78678 lncRNA upstream 116875 17864010 ~ 17864883 (-) True G66355
TU78732 lncRNA upstream 268009 18015144 ~ 18020809 (-) True G66387
TU79023 lncRNA upstream 639426 18386561 ~ 18386990 (-) True G66651
XM_026936044.2 mRNA downstream 85856 17648230 ~ 17651920 (-) True LOC113539922
XM_026936045.2 mRNA downstream 86683 17648230 ~ 17651093 (-) False LOC113539922
XM_026936033.2 mRNA downstream 184636 17540590 ~ 17553140 (-) False ache
XM_026936034.2 mRNA downstream 184636 17540590 ~ 17553140 (-) True ache
XM_026936035.2 mRNA downstream 184889 17540590 ~ 17552887 (-) False ache
XM_026936055.2 mRNA upstream 820 17747955 ~ 17751639 (-) True serpine1
XM_026936054.2 mRNA upstream 820 17747955 ~ 17751619 (-) False serpine1
XM_026936046.2 mRNA upstream 18013 17765148 ~ 17769886 (-) True zgc:77439
XM_026936047.2 mRNA upstream 18013 17765148 ~ 17769226 (-) False zgc:77439
XM_026936039.2 mRNA upstream 79505 17826640 ~ 17839915 (-) True map11
TU78578 other downstream 102908 17594449 ~ 17634868 (-) True G66281
TU78241 other downstream 293602 17439493 ~ 17444174 (-) False rnaseka
TU78232 other downstream 335312 17400594 ~ 17402464 (-) True G66053
TU77801 other downstream 1132059 16604108 ~ 16605717 (-) False bmp15
TU77497 other downstream 1314612 16419310 ~ 16423164 (-) True tnfsf12
trnas-uga other upstream 24015 17771150 ~ 17771231 (-) True trnas-uga
TU78662 other upstream 45091 17792226 ~ 17830126 (-) False map11
XR_003404075.1 other upstream 168495 17915630 ~ 17915771 (-) True LOC113540701
XR_003404117.1 other upstream 1269688 19016823 ~ 19016953 (-) True LOC113540749
XR_003404118.1 other upstream 1270135 19017270 ~ 19017400 (-) True LOC113540750

Expression Profile