RNA id: XM_026936079.2


Basic Information

Item Value
RNA id XM_026936079.2
length 1382
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC113539938
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 17700478 ~ 17702323 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACATTTGCTGTTTATCCTCAGAGAAGCAATGGAGGCACAGTTTGTAGAAGAAAGTGATGGTCTAACATTCTGGCTGGCCAGACCACAAGACTATGATGAGGTAATGGTCATATCACAGGACATCTACCAGGGCAATGACTACCTTCCACATCGCTATCACACCTGGATGACTGAGCGTGAAAGAGTGGTCATTCTTGGCAAGAGGAAGTGGAAGCTAGTGGCACTGAACTCTGCACTGCTGGTTGATGGAGGGCAAACTGTGGTGTTGGAGGGATTAAGGGTGTGTCCTAGTGAAAGAGGACGCGGTGTGGCTGGAGTTATTCAGAGAGTGACTGACCGCTACATTAAGCAGGTTTACCCAAGTGTAACAACCAAACGACTGACAAGAAGTGACAACCCAGGACCTGAAAAACTCTCCAAGTTTATTTTTCTGGCTTGCCGGgctatTCTGTCTTTGTTTGGAGAGGCTGAGAGATTTAAAGGATTTGTCTCAGGCCTGAAAACAAAACTGGAAAGCACAGAGAAGTCAGATGGGCCCAGCAACAACCAAAAACTATTTGTTCTGAAGGACATCCATCAGCTTAAGGCAATACTCCTGGACCCTGATCTTTCCTTGAGACTTCAGCTTCCAGGAGGTGCCATCATCCAAGACTGGCAGCCTCTGAAACCAATGGAAAGCAACCTGGAAATTTTAGAAAGGCGAAACCTAACTTGGATGGTTGACTGTTTTGATGATAAACCAATGTTTATGAGCTTCCACACACCACCCTATCCTGTTCCATTTAATGGAGGTTCTTTGATGCTGAACATAGACATGTTTGGGACTGATGTATTCATAGCGAAGAAAGCACTGATAGCACATTTAGAGCAGGTAATTGAGGAGATTCATGGCTCTGTTGTGGTTCATGTTTACATGCCTCAAACCTTTTGGGAAGCTATGAGACAGTTTTGTGAGGGAGATGAAGGAGTAAAACAATATATGGATTACTGGGAGCAACAGTTTCTGGAGAAAGAGATGTCATAATTAGTAGAGATagtgagacagagaatgagagatgTCCTAGTGATATGGAGGATGGTAGAATTCAGAATAGACAGCACTCAGTAGCAATATTTTTAGTAAATAAGGTTCATTGATTTATAGAAATTTACTAGTTAATTGTTATACAGAGTTTCCCAAAGGTCTCCACACaaaaatgtcttcaaaaatTTTTCATGcttagtttatattatgtatattttttccagatagcctttaagaatgaatttgacaaaagaagaatgtattgaaatcattatCATGGATAGATTGGAAAGCTGCATgcaacaccagatgtgttaacacaagttcatcatgagtgggagagacaactctgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78365 lncRNA upstream 48768 17649365 ~ 17651710 (+) True G66144
TU78339 lncRNA upstream 65611 17593754 ~ 17634867 (+) True G66128
TU78379 lncRNA downstream 911 17703234 ~ 17703455 (+) True G66151
TU78387 lncRNA downstream 37752 17740075 ~ 17747165 (+) True G66159
TU78431 lncRNA downstream 70230 17772553 ~ 17775309 (+) True G66179
TU78468 lncRNA downstream 171076 17873399 ~ 17877074 (+) True G66214
TU78405 lncRNA downstream 202288 17904611 ~ 17919097 (+) True G66169
XM_026936056.2 mRNA upstream 2207 17694648 ~ 17698271 (+) True LOC113539928
XM_026936057.2 mRNA upstream 2207 17694648 ~ 17698271 (+) False LOC113539928
XM_026936069.2 mRNA upstream 18992 17673548 ~ 17681486 (+) False si:ch211-196f2.6
XM_026936067.2 mRNA upstream 18992 17673550 ~ 17681486 (+) True si:ch211-196f2.6
XM_026936060.2 mRNA upstream 35502 17655320 ~ 17664976 (+) True nat16
XM_026936031.2 mRNA downstream 19826 17722149 ~ 17726409 (+) True vgf
XM_034303838.1 mRNA downstream 82667 17784990 ~ 17826526 (+) True zanl
XM_026936049.2 mRNA downstream 187160 17889483 ~ 17893961 (+) True LOC113539925
XM_026936051.2 mRNA downstream 187204 17889527 ~ 17893960 (+) False LOC113539925
XM_026936052.2 mRNA downstream 187204 17889527 ~ 17893960 (+) False LOC113539925
TU78354 other upstream 80399 17609704 ~ 17620079 (+) True LOC113539940
XR_003404112.1 other upstream 938603 16761804 ~ 16761875 (+) True LOC113540742
XR_003404114.1 other upstream 938831 16761572 ~ 16761647 (+) True LOC113540744
XR_003404113.1 other upstream 939140 16761266 ~ 16761338 (+) True LOC113540743
XR_003404115.1 other upstream 939371 16760981 ~ 16761107 (+) True LOC113540745
trnat-agu other downstream 62138 17764461 ~ 17764534 (+) True trnat-agu
XR_003403977.2 other downstream 297835 18000158 ~ 18010962 (+) False ctdnep1b
XR_004577948.1 other downstream 411121 18113444 ~ 18130505 (+) False frem1a
TU78855 other downstream 494989 18197312 ~ 18208564 (+) True G66492
TU79253 other downstream 1154133 18856456 ~ 18858652 (+) True G66864

Expression Profile