RNA id: XM_026936086.2


Basic Information

Item Value
RNA id XM_026936086.2
length 2441
RNA type mRNA
GC content 0.39
exon number 5
gene id LOC113539948
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26941327 ~ 26951857 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCTTGGTCTGGGCACATTGTGTGTTCCTGGGTCTTAGTGTGCATTCCACTCTAAAATGTCCTTTATGTCTGCAGTATATACACATGCTTATGTTTGTGTGGTTTCAAACAAACCAGGTTTTGTTTTGGGTAAGGAGAAAGCATAACCCCcttgacaatgacaataaatcttgaaccttgaacctggTCACAGTTCGCCTGGTTTTAATGAATATGTCTCTAACCTGCATCTTTTCTGGAGACTTGATGGTCAAATACTTCTCCAAACTCTTTCTTGAACTCTGCAAATGTTTGAGATAGCATTGCTTAGTCAAACATTTGAGCTTGGTCAAAAATGGTGATGCTCTACCGCAGAAAAGAAATAGAACTTGTCGGATTTTGTCCACATCTCTGGGGTGAACAGAGTGAACTTTCAAAGAGTAATAAGCATTGACCAGGAGAGCCAGATAGAGCTTTTGGGTAAAccaaacagctataaacaaaagCACGGCAAGAAAGAATGGCCCAGAACTTTTTAGAATAAGAAACCTTTATGCGtcatcccagcttgttaggaagttggggtcggAGCTCAGGGTCAGCAGTGATACAGTGCCCCTGAAGCATAGAGGGTTCACGGCCATACACTAATAATAGTACTTAGCATGGCTTCatggtgtgtatgagtgtccATGTGCTTTATATATTATGGGAAAAGGAAATGAGTATGATAATGGAAGAAGAGTCCTAACCCTAAACCTTCAGAACATCACCGCatggttaattattttcctataagagcatgccTTGTAATGTAATAGTCCATGTATATTTAATCACCAGGTAGTTTTATCTTTTAGTCATTATAATTTTAGTCAtacacaatgaaattctttaatactttaaaactcattaataaaatattgtcaACAGGTTTTGTTCCAGTCATCCTGTCGACCATGACATTAAGCTCTTTCCTCATCAATAAAACCATGACATGGGCAGATGCACAAAATTACTGCAAGACTGTATATGTTGACCTGGCTATGGCTAAAAGTCAAACCTCTTTGCTGAAACTAAGAGACACattagcaaaacaaaatgtcacAGGGCCTGTCTGGATGGGACTGTACAATGACTTAGACACCTGGCGCTGGTCCTACAACAGTCGCCTGTTAAATAATATAACCCTAAGAATGTGGGCTGGTGGACAACCTGATAATCAGAACGGTCATGAATGCTGTGCTGCAATAGACAACAATGGAACGTGGTGGGATATGTCCTGCCTAGACGTAAACCCCTTCATATGCTATAGTGCTAGTGGTGCAAACAGGTATGTTGGTGTTACTACTATGTTGAACTGGGCTGATGCTCAGGCTTACTGCAGGCAGTATTACACAGACCTGGCCAGCCCATTCAATGCCACAGATAACAGCCTGGTACAGCAAGTGGCAACAGTCCAGGGGTTTTCTTGGTTCGGTCTATTCAGGGACAGCTGGAGGTGGGTAGATGGGACCAAAGTTGGCCAACTCTTGTGGCAATCCCCACTGCCTGATAATGTTGATCCCCAGGAAAACTGCGGCACACTTAATGGCGGAATATTTGATGATACAAAATGCACCAACCAGTACTATTTCATCTGTGACATCATTCCAGTGGTGAAATATGCAGTGAAACTGCAGGTGAAGTCTGATCAGAGTGTGTTTGATCCTGCTGTGATTGCAGCCATTTTAGAGCAGATCAAACAGAAACTGGATAAAAAGACCACTGTGTCCTGGAGGGTTCAGCCAGACAGAAACATCTTTCACAAGAAAATCCAGCCCAACAGccCTTGAAATTGCTTGGAAAATATGTTAACCTGTCTGTTTTACTCCTGCCTGGTTATCTGATTATTCCTCTGGTTTTGGGAATACTGTGATCATTGTTTTTGACCCTGACCCTTCAAAGTACCACAGGACCAGATGCTCTCTGAGGTCAGATGTTACAAAAAATGTTACAGCAAAACTCATTTttacagttaattttttttgggaaaaaaatgactatatgtggaatacacacacatgaaatcATGATTCCACATTTTCTCAGTCAGATcagattaaatatttattcataaatatttatctatttatataatgttataacctaaacattttatttattaacttgtttatttctgtgtctcttttgtttctgatttctgtttttataactttttttgtcCTCATTGTTTTTGTGAGAATTAGAtactgtaatgtactgtaaataattaaacatgcaGACTTCTGGACCACAAAACGTTAGACATTTTTTAGGCAGGGTTTTTCTCCACCAATAAATAAAGGTGCCTTCAACTGTCAGTTTAAGGtctgttttaatttgtaatcTAGATGTCGATTGtgctttttgtttcattttatctGCCTCCTGAATTCTGTTTTAGATCATTTAAATGAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU84807 lncRNA upstream 66250 26872676 ~ 26881469 (+) True gng7
TU84796 lncRNA upstream 91114 26808057 ~ 26856605 (+) True G71557
TU84789 lncRNA upstream 161159 26784572 ~ 26786560 (+) True G71550
TU84751 lncRNA upstream 279591 26667762 ~ 26668128 (+) True G71519
TU84702 lncRNA upstream 396693 26472575 ~ 26551026 (+) True G71485
TU85145 lncRNA downstream 90846 27042703 ~ 27042912 (+) True G71819
TU85154 lncRNA downstream 121984 27073841 ~ 27074076 (+) True G71827
TU85197 lncRNA downstream 244144 27196001 ~ 27196373 (+) True G71864
TU85201 lncRNA downstream 265495 27217352 ~ 27217839 (+) True G71868
TU85202 lncRNA downstream 266370 27218227 ~ 27218455 (+) True G71869
XM_034304003.1 mRNA upstream 45353 26900847 ~ 26902366 (+) True gpr160
XM_034303632.1 mRNA upstream 66249 26872691 ~ 26881470 (+) False gng7
XM_026937246.2 mRNA upstream 82204 26857531 ~ 26865515 (+) True zgc:101744
XM_034304041.1 mRNA upstream 93570 26846924 ~ 26854149 (+) True elavl1a
XM_034303578.1 mRNA downstream 31884 26983741 ~ 27013645 (+) True LOC113540685
XM_026937325.2 mRNA downstream 31884 26983741 ~ 27013645 (+) False LOC113540685
XM_026937335.2 mRNA downstream 31884 26983741 ~ 27013645 (+) False LOC113540685
XM_026937338.2 mRNA downstream 31884 26983741 ~ 27013645 (+) False LOC113540685
XM_034303579.1 mRNA downstream 31884 26983741 ~ 27013645 (+) False LOC113540685
XR_003404105.1 other upstream 283637 26663971 ~ 26664082 (+) True LOC113540735
TU84616 other upstream 571940 26353189 ~ 26375779 (+) True LOC117597079
TU84618 other upstream 583486 26353189 ~ 26364233 (+) False LOC117597079
XR_004578101.1 other upstream 654935 26288292 ~ 26292784 (+) False zgc:66427
XR_003404108.2 other downstream 161291 27113148 ~ 27113254 (+) True LOC113540738
trnat-ugu_5 other downstream 537396 27489253 ~ 27489325 (+) True trnat-ugu_5
XR_003404069.1 other downstream 604660 27556517 ~ 27556648 (+) True LOC113540695
XR_003404070.2 other downstream 605908 27557765 ~ 27557902 (+) True LOC113540696
trnat-ugu_6 other downstream 668748 27620605 ~ 27620677 (+) True trnat-ugu_6

Expression Profile