RNA id: XM_026936091.2


Basic Information

Item Value
RNA id XM_026936091.2
length 6068
RNA type mRNA
GC content 0.45
exon number 24
gene id LOC113539949
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27287161 ~ 27310976 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCGCGTCGTTTACGAGAAACTCCGCGACGATTTACTTGGAAGCTAGGGCTAGCTGTGTGTGATAATGGACGGTACAGACGTAAAAACGAGTCATATAAACACAGAAATTCATCATTAAACGGTGTTATTTTTATGTCTTTGTGAATAGAACGCTGTTCCGAGGCTCTGCTGATGAAAATAAATCGTCACTGAGTGTGGTGTGAACATCGTAGAAATGGAAGTGGGCCGTCAGATCCTGGGGAAGTTGCAGAGGAGGAAGAAGTCGCAGCTGATGTCAGCTGTGATCCTGCCAGGACTGGAGGTGCACTTTTACCTGGCAGACACGCAACAGATCATCCACCTGAAAGGCTGTCACTCGGCCGAGCAGCTGTGCACCGAAGCCGCCAAGAAGCTGGGTCTTTCTCCATTATGCAGCAGTCTGTTTGCTCTGTACAATGAAACAAACAGGACATGGTTTCCTCCAAATCATGTGTTCATCGTAGACGAGACTACAAGACTCAGGCTGCACTATCgcatgagGTTTTATTTCACTAACTGGCACGGGACCAGGAAGAAACCTCTAGCTGTCGTGCGACACAGTCTCAAACAGACAGGAAACCAGGGGACGGCTCTTCTGGACTCACCGTCACTGACCTACCTATACGCACAGagtCAATATGATTTCCAGAGCGGCTCAGCAGCACTTCGCAGCTTTCAGAGTGAGGAAGATGCCCAGCATATGGAGAATGAGTGTTTGGGAATGGCAGTGATGGCTATTTCCCATGATGCCATGGGCAAAAACCTGCCTGCACGGGAACTGGCTAAGAAATTCAAGTACAAGAACTACATCCCGGTCAGTCTGAACCGCTCCATCTCTCAGAGGAACTTGCTGACGCGCCTGCGCATCTCCAACGTCTTCAAGGCGTTTCTCGAGGAGTTCAACGACAACACGGTGCTGAAGAACAGCGTCAGCAATCACGACTTGAAGGTCAAGTACATTTCCACTCTCGAGACTCTGACCAGACACTTTGGCTGTGAGGTGTACGAACCCTTGTCCGTCAGTATCCACGAGAATGACGAGGTTCCCTGCAGTTCTGCGAGAGAGGACGGAGCTCAGCGTCGCGTGCTCATTTCCGGAACCCGCGGCATTGAGTGGCAGAGCGTGTCTCCTGAGacctgCCCAAATCTACAGAGGAAGAAATCAAAGAGGAACAAAAGTCAACAGGGTCAGCTCAGCGATGTCAGAAAAGAAGACAACTGGACGACGTTCTCGGATTTCCACGAGATCACGCACATCGTCATCAAGGAGGCGCTGGTCACGGTTTACAGACAAGACGACAGGAGGATGGAAGTGCGCTTCGCTGGCCGTGAGGAGGCCCTGGCCTTCACCAGCCTGATAGACGGCTACTTCAGGCTCACTGTGGACGCACATCACTTCCTGTGCACTGAGGTCGCTCCCGTCTCCGTAGAAACCAACCTACGTGAGGGATGTCACGGACCAATCAGCACCGAGTACGCTGTTCATAAGCTCAAACAGGAAGGTTACGAGGAGGGCATGTACATCCTGCGCTGGAGCTGTGCTCATTACGACCACGTCCTGCTCACCGTCATCTGCAATGAGAGAGACGTCTCAGGTGAGATCATCAAGACCTTCAAGAATTTTCAGATCGAGAGGACTGAGGGTGGATTTCGTCTCTGTGGGACGGACGTGGAGAAACCCACACTGAGGGAACTGACCGACCGGCTGTGTGGTCAGTGTCTGAGTACGGACAACACCACTCTGAAGCTGGCACGAGGTTGTCCTCCTCAGCCTCGAGAGCTGTCTAATCTCCTGATGGTGACGAGGTCGGACTCCATCACTCCGCCCTCCGTGAGCCACCTTGTCTTAAACCCCATCAAGAAAGAGAACATCGTACAGGACAAGCACTTGGGGAAAGGAACTCGTACAAACATATACTCGGGCACGCTGAGGCCGAAGAGCGATGAGGACAGTCTGATCAGCTTCAGCACTGAGGATGTCCCTGTGGTCCTGAAGGTGATCGGAACAGGACTTAAGGATGttgcaGCCTTTTTGGAAACTGTGAGTCAGATGCGTGAgatctcacacaaacacatgacacATCTGTATGGCATCTGCATGTACAGCATGGACATCATCATGGTGGAGGAGTTTGTGAAGCACGGACCTCTGGATCTGTTCATGCGCGCTCATCACGCTGAGCTCACGCCGTCCTGGAAGTTTCAGGTTGCCGAGCAGCTCGCTAGCGTCCTCAGCTATCTGGAGGATAAGAAGCTCGTCCATGGCTACGTGTGCACAAAGAACATCCTGTTAGTGAAAGATGGTCTGGATGGACAACAAGCTCCATTCATAAAGCTCAGCAAGCCGGGAGTCCCGATCACTACGCTCAACCGAGAAGAGTGTATCGACAGGATCCCATGGATCGCTCCGGAGTGTGTGAAGAACCCTAAAGCACAGACCGTGGCTGCGGATAAGTGGGGCTTCGGGACGACGCTGTGGGAGATCTGCTACAACGGAGAAGTGCCGCTCAGGGACAAGAAACGTGCCGAGAAGGAGTGGTTCTATGAAGCCAAGGGCACACTGGTGATTCCCAACTGCAGTGAACTGGCCGAGCTCATCACCCAGTGCATGAACTATGACCCCAAAAAGAGACCGTTCTTCAGAGCCATAGTGCGAGAACTGGACCGTATCAAGGAGCAGAACCCGGCGATGGTGTCAGGTGGTGTTCCTGTGCAGGAGATCGACCCCACGCTGTTTGAGAGCAGATTCCTCAAGACAATACGGGACCTGGGAGAGGGTCACTTTGGGAAGGTGGAGCTGTGTCAGTACGACCCACACGGAGACCGCAACGGTCAGATGGTGGCTGTCAAGTCGCTGAAGTCTGAAAGTGATGGACCTGAGAGCAGCAACCTGAGGAGAGAAATCAGCACCATGAGAGAGCTTTACCACACCAACATCGTCAAGTACAAAGGCATCTGTACTGAGGAAGgtgggaGAACGATTAAACTGATCATGGAGTATCTGCCTGCTGGGAGTCTGAAGGACTATCTGCCCCGACACAAAGCTCAGACAAGCCAACAGCGCCTGCTGCTCTACGCCATCCAGATCTGTCAGgGAATGGACTACCTGGGCTCTCAGAACTACATCCACAGAGACCTGGCGGCTCGTAACGTGCTGGTGGAGAGCGAGACACTGGTCAAGATCGGAGACTTCGGTCTGACGAAGAGCATCAAAGACAATGAGGAGTACTACACGGTCAGGGAGGAGCAGGACAGTCCGGTGTACTGGTACGCACCTGAGTGTCTGATCCACCGAAAGTTTTACAAAGCCTCAGACGTCTGGTCTTTCGGAGTCACACTGTACGAACTCATGACCTACTGTGACCGCAAGATGAGTCCTCCTGAGATGTTCCTGAACACGATTGGCCGATCGCACGGTCAGATGACAATGGCGAGACTGGTGAAGGCTCTGGAAGGTGGCTGGAGGCTGTCCTGTCCTACATCTTGCCCAGATGTGGTGTACACACAGATGCGGAGGTGCTGGGTTCACGCTCCAGAGGACCGTGTAGACTTCAAAGGCCTGATCGAGGTGTTCGAGCGTCTCTTGTCGAGCGAAGAACTCAGTTTAGTGCACAGCTGTTAAATCgctcactttttaatacttttactGTCATGCATATCGTGTCTTATCTTTTTTTAAGGCCTGAACTCATCCAAAATTATTCATTGGCAATAGAGCAGGTTGTATTATTACATCTGAAGACCTCTGAGCACTTAAACAGTCAGAATCTggtcaaattaaaaataattagaagAATAATTATCCTTGGGGTGATATACTTTTACATTAGATGTTACATGTTCATATATCCATATAAAAGTCCACAATAATACCCTAAAAGTGTTCTTATTCTGCAGGATTTTAAGCAaactcactcattagggatgtCTTTTCAGACATTACAGCTGTAATCAGTGATGTTTGAGTTAGGACATCTCCTCAGAGGAGAAACTTTGACCTCCATAGCGCTCCAgaatataaacaaaagaaacaagatGTGGACCACCGacaattaaccaatcaggacaaagaAAGCCCCACAGCTTGCATTAGCATTTGGACAGTACACGTGCATGTTTAAGGGGCATGGCTTTGGAGAGGACACTGAGATCCTTTTGATTTATGAAACAGCCCGGCTAAAATCGTTGATTGTGCCTTTAAGGCAGTTTATTTAAAGTATGTCACGACAGAATCAGACTGAGTTACTAagatttatttgatttactttaaacagtaaaatgcTCTGGTGTGTAAATCATTATTCTGTACAAAGACAGTGGAGGAAAATTGTTCTGTGTACGAAATAATGAATGTATGTGGTAACTGATTTAAAGTCGATTTAGCCCAGTGTCACTAGTTTTACAAGAACCATACTACATTCTATACAGCTACATTcttacttttaaaaaacaaacaaacaaaaaagtaacaatttttctaaataaagcATGGTCTGCAATTTGCCAGTTTATTGGTTACGAATTGCCAGTTTATTGGTTTATCTATTACTTGCCTGTGTATTTAGCATATAGTGGTTGCGTGTGCATATAGTGGGACGTGatttataaattattgtttGCATTAATAACATCATGTGCTAAGTCAGGGAAGGAAGCAATATTTAAACAGGATTTTTGTGTGCGCTAATTGTTCTCGATAGCTGTGAGTTCAGGTCTCAAAGAGACATCTGTAAGAGTGAAACTAAACCTACATTGAAATTACATGTCAAGTATAATGCTGGTTAAAGGCAGTGAGTCAGAAAGCTGttcaaaattaaatatgaatgtaaaataagAGTGCAGATATTagcatgtgtgtttataagGTAAATTAAAATGCTTTCGATGTCGGAGGTGTAAGTATGAAACAAAATTGTTCGAAGTTAAGTTTTGAGAAATTGGTTATTTTTGAGAATGCTGAGACATAATTTGgagaaatgatttttaaaaatggtcatAGTTGTATTTTACACACAATCTCTGTTCCTTACTTTCATGTCAGGTGATAAATTAATCTATTCGCCTTGACTCCACACACTATTTTAAACTTTTAGGTGAAAACTACCCCAAATTACAAAAACAGATTGTGTGAAAGACGCAGTTCTCCATAGgagtttttttctgtattgtttttACTTGAtcttaacatttaataaatcaggtgaaaaaaatctgtggtGCTGCATTATGCGAAACAGTGGCATGATATTATGAGACAGCTGCTGTCGCATACTTAGATTTGAGTTTGGGATAAACACCATGACCTATAAAATCTGCTTCTTCCCATTCCTCCTGTGCCAGTTGATGTATAATCGATTACTGGCACATCCCGGCTTTACACTTAACATTCGTCACGCTCCCTGGTATGGAAGCTTGATTCTACCTcatatgagaaaatattatgCAGAAAATGATCTTGCAGTTGCGAGGTAATATCATGCCCTtgcgacttttttttaaaatctagtacttgtgttattttttttctacttgttaatatcacacacacgTGACTTAGTGCTTCCGTTTCCAATAATCAAACCACAACAACACAAGCGTACGCAGCAGTGCGTAAGCAAGGGATATAAATAGTTTAGTTATGGGTTAAGGATACTCTAATAAGCGAAAGCAAAATGTCACACTAATTAACAATTGTGAGATAAAAAGTTGCAAATGTGAGAGATTAACCTTCAGGATAAAAAGTCACAGTTGCGAGATaatctgtgtaatattttcCCATGTGTGGCAGAATCAGGCTTCCATTGCCACCACACCACTGCCACTATACCATTGCCATTTTGCCtttaagtatatttttttatgttttacataGATCTATTAAATTATGCGTCATGTTAACTTCTGCAGTTTGCACAGAATCGTCAAATAGCAGGTATAGGGTTCTGGACATTATCAATAATCAAACGTGATGTTCCAATTTGCTGCTTTGTTATTGACGTCTTTGTcaaattcattaaaacattattaaaattctctttattttcttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85300 lncRNA downstream 463 27286239 ~ 27286698 (-) True G71955
TU85295 lncRNA downstream 3504 27281049 ~ 27283657 (-) True G71952
TU85288 lncRNA downstream 7794 27277017 ~ 27279367 (-) True G71951
TU85287 lncRNA downstream 12654 27274181 ~ 27274507 (-) True G71950
TU85254 lncRNA downstream 72762 27214152 ~ 27214399 (-) True G71918
TU85431 lncRNA upstream 90694 27401670 ~ 27402635 (-) True G72073
TU85433 lncRNA upstream 92161 27403137 ~ 27406819 (-) True G72074
TU85454 lncRNA upstream 133767 27444743 ~ 27445114 (-) True G72094
TU85461 lncRNA upstream 163789 27474765 ~ 27477666 (-) True tsen15
TU85953 lncRNA upstream 258268 27569244 ~ 27970795 (-) False G72517
XM_026936576.2 mRNA downstream 25260 27237944 ~ 27261901 (-) False LOC113540236
XM_026936577.2 mRNA downstream 25260 27237944 ~ 27261901 (-) True LOC113540236
XM_026936204.2 mRNA downstream 129146 27153499 ~ 27158015 (-) True LOC113540028
XM_034303292.1 mRNA downstream 143310 27108812 ~ 27143851 (-) False cfap57
XM_034304155.1 mRNA upstream 70199 27381175 ~ 27385533 (-) True si:ch211-107p11.3
XM_034304156.1 mRNA upstream 70199 27381175 ~ 27385533 (-) False si:ch211-107p11.3
XM_034304154.1 mRNA upstream 70199 27381175 ~ 27385533 (-) False si:ch211-107p11.3
XM_026937159.2 mRNA upstream 102480 27413456 ~ 27414564 (-) True insl5b
XM_034303470.1 mRNA upstream 104291 27415267 ~ 27432569 (-) False LOC113540508
TU85245 other downstream 82975 27203783 ~ 27204186 (-) True G71909
TU85159 other downstream 186303 27096602 ~ 27100858 (-) True G71832
TU84853 other downstream 736131 26472080 ~ 26551030 (-) False G71596
TU84852 other downstream 736131 26537102 ~ 26551030 (-) False G71596
TU84653 other downstream 911073 26373758 ~ 26376088 (-) False ltb4r2b
trnat-ugu_3 other upstream 84381 27395357 ~ 27395429 (-) True trnat-ugu_3
trnat-ugu_4 other upstream 85175 27396151 ~ 27396223 (-) True trnat-ugu_4
XR_003404034.2 other upstream 117444 27428420 ~ 27432678 (-) False LOC113540508
XR_004578066.1 other upstream 236776 27547752 ~ 27555986 (-) False pcyt1aa
trnat-ugu_7 other upstream 310080 27621056 ~ 27621128 (-) True trnat-ugu_7

Expression Profile