RNA id: XM_026936099.2


Basic Information

Item Value
RNA id XM_026936099.2
length 3302
RNA type mRNA
GC content 0.47
exon number 6
gene id cckar
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 15904355 ~ 15916921 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAACAAGGACTCCGAAACACGAAATAAATCATGACCTGCCCCAGAGGAGATGTAGACATGATGGCACGTCACCAGTCGCTGCTAGCCTGTTTTCCATTTTCCAGTCGATGAAGAAggaatctgtcttttttttccccccttgaGATCTGGACAGACAAGAACCCAAGCCAACATGGAGACATTCACTATACATGACATGCTCATTAACAGCACGgacatttataaaatactgtGTGAGTTCGCCTTCAGGAACATGTCCGAGTGCGAGAACCCCAGCGACCTGGGCACACAACCACCAGCGCTGGAGCCTAAAGATATAAACCAGACGGTGCGGATCATTCTCTACTGTGTGATCTTCCTGCTGAGTGTTCTGGGGAACAGCCTGATCATCGCAGTGCTGGTGAGGAACCGGCGCATGCGAACCGTCACCAACCTCTTCCTGCTCTCTCTGGCAGTCAGCGACCTGATGCTGTGCGTGTTCTGTATGCCTTTCACCCTCATTCCCAACCTGATGAAGAACTTCGTCTTCGGCAGCGGCATCTGTAAAGTGGCCACCTACTTCATGGGTATCTCGGTAAGCGTGTCCACCTTCAACCTGGTGGCCATCTCTCTGGAGCGCTACAGTGCCATCTGCAATCCACTAACATCACGCACATGGCAGACCAAATCCCACGCCGCAAAGGTGATCAGCGCCACATGGCTGCTATCCTTCCTGCTCATGGTGCCGTACCCAATCTCCAGCACGCTCGTGCCCTACCGccgcaacaacaacagcacggGCAACATGTGCCGCCACATCTGGCCCAGCGACATCATCCAGCAGTCATGGTATGTTTTCCTGTTATTGATCCTCATCCTGGTGCCAGGAATTGTGATGATGACAGCATATGGGCTAATCTCTGTCGAGCTGTACAGAGGAATCAAGTTTGAAATGGCTAACAGAAAGGCAAGCCAAGAGAGGCAGAGCAGCACAGGAAGCCTGAAGCCCAGCGAGTGTGACGGCTGCTATCTTCAGCCCTCCAAGAAGAAGCGCTCAGATGCGTCCGCCAATCAGCAATCGGCACTTCTGGCTTCCAGCAGCAAGCCCAAGCTGAACCGTGTGTGCAGCAACAGCCCCACAGCCAACCTGATGGCCAAGAAGCGCGTGATCCGCATGCTGTTGGTCATCGTGGTGCTCTTCTTCCTCTGCTGGACGCCCGTGTTTGCGGCGAATGCCTGGCGAGCATTTGACAAGCGCTCGGCTGACCGCCTGCTCTCCGGAGCTCCCATCTCCTTCATCCACCTGCTCTCGTACACCTCAGCATGCGTCAACCCCATCATCTACTGCTTCATGAACAAGCGCTTTCGTCAAGGCATGCTAGCTACCTTCACCTGCTGCACAGGGCACGCAGACAGAGAGGGCCGGGGCAGCGGGCGCCTCAGTgccggaggaggaggaggaggaggaggaggaggaggaggagcgttTGGAACTCTGGGATGCGCTGGAGGGGGAGGGAAGGAGAACACACAGTCCAGCGGGACTCTCACCAGGCTGACATACAGCAGCATCCGCGGGTCAGCACAAGCATAACAGAGTAAAAAGAGAGTTAATCTGAGAACTCACTGGATTCCTTTAATGATCATCTGCTCTGGGATGTTTCCTTCAAAGATTTCAAAGATTGGTACGTGAGGAAAAACAGTTGCCtacttatttttaatctgtttctgAAGAGGAGCCTTTTTCTTTGTATTCCTTTCAATCCAGGCAGCTCAATGGCAGTTTTCTGAAAAGTTTGGACTTTTCCTATGACCTGAAAAACCAGAGCATTAGCTGAGAACTGAACTGCTCACTGATATACGAGGCATTAAGTCTGTATGCACTAGTGAGCAAGAACATTGAGAGACTGATGTTAGAGTCCAGTGTTTAAATTTGAATTCATGTCACTGGTGAGTAAACAGATACATCAAATGGAGCATGACTGTGCACGGCTTGAGAGTCGCTCTAGTCTGCATTAGGGCACTGACTCATGCATGAGCCTTTTATGAAACACAAGAATTGATGGATTGATCCTGGCCCATCTATAAtcatgcacagagagagaggagaggaggttCGTTAAGGGGCTGAAAATTTATCTGTTCATCAATACAGTTTTATCCTCTGTGTAGTATGATAGGTCTAGAACCACTCATCTAGCAAATATGAAAAGATATGGAAAAACATTACATCTTGCTGGACTTATGAGGGGAAAATCATAATACtttccttagttccagtggatGAATAATACAGTTAACACTCAGTGATAAAGTAACTCCAATCGGTTCTTTTTTATATACCACACTAGCTGTTTCTTTCCCTTCATTGGATAATTTGCATTCAGTCATTTTCAAActacacagagaaaaaaacaatactgaTGATTTCATCTGACTTTGGTGTAAAGAATATGTATTGCACCATTAAACTTTCCGCCACttgctgtgtttttatgttttgtggcGCACACTGGCTGAAAGGGACTGAGGTTGTCCAGATGCtctgagaaaacacacagctaacGCTTTCAGAGACTGTACAGACCTCCAGCATAGCCGAACCGCATGCAGTCCTTCAGAATGATGCCAAACAAACATACCCAGAAGTCAGTTTGAAGTTCTGTGTACATACTATTAGCCACATATAATTTACTCCTTTGGGCCATTTTTCAGattgaaaaaaaaccccacacaaatataaacagatgCAAACActgttatatgtaaatataatgaaacatCCTGGCAAGCCTGCATACCTCCGTAGCTACAATCTATTGTCATTGCCACACAAATATGCAGAAACGTGTAAATACAGCGTTGGTAAATTTCATTGCTGACGCTCTTTGTACAGCGTCTATGTTCATGGGGTATATCAGCACAAGCACCGcatcaaccttttttttcctcccaaagGTACACAGTAGATTCTTTATCCAAATACTGAGTGTTCTTTGAACCTGTACAGATTGTACCTTTTATTTGATCTGCCGCCCTTTCTTATCTTCCCATGAGACTTTTCTCACCTGTGAGCAACACGGAAAGCATCAAGCCAAGGCCTGTCACTCACACCTGGGCCTTTTCCTCCCGAAGGAAAATGTAGCATTTTGTATGAATTACATTTCTCGATTAAATacgttttatttctgttttcattgttcACTAACTGTATGTAGACTGTTTGAAATATACTGCATTACTTCATGCATACAAGACACTGTAATTGCTCATGTATGCTTCTTGGTGGTGACTAAACACTGAACATAATAAAAGCTTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77079 lncRNA upstream 33584 15869198 ~ 15870771 (+) True G65115
XR_004578089.1 lncRNA upstream 347431 15506292 ~ 15556924 (+) True LOC117597190
TU76906 lncRNA upstream 702827 15201309 ~ 15201528 (+) True G64963
XR_004578083.1 lncRNA upstream 892862 14977326 ~ 15011493 (+) True LOC117597182
XR_004578084.1 lncRNA upstream 892862 14977326 ~ 15011493 (+) False LOC117597182
TU77137 lncRNA downstream 84234 16001155 ~ 16001461 (+) True G65170
TU77152 lncRNA downstream 102936 16019857 ~ 16055145 (+) True G65184
TU77172 lncRNA downstream 145167 16062088 ~ 16063461 (+) True G65199
TU77337 lncRNA downstream 306497 16223418 ~ 16231115 (+) True G65335
TU77409 lncRNA downstream 475208 16392129 ~ 16392363 (+) True G65382
XM_026936678.2 mRNA upstream 935754 14889300 ~ 14968601 (+) True zmp:0000000660
XM_026937085.2 mRNA upstream 1074444 14824102 ~ 14829911 (+) True paqr9
XM_034303978.1 mRNA upstream 1142790 14686254 ~ 14761565 (+) True adam19a
XM_034304075.1 mRNA upstream 1257115 14638490 ~ 14647240 (+) True zgc:194930
XM_026936434.2 mRNA upstream 1257116 14632060 ~ 14647239 (+) False zgc:194930
XM_026936548.2 mRNA downstream 75254 15992175 ~ 16000945 (+) True plaa
XM_026936290.2 mRNA downstream 106273 16023194 ~ 16036384 (+) False LOC113540079
XM_026936288.2 mRNA downstream 106274 16023195 ~ 16039984 (+) True LOC113540079
XM_034303656.1 mRNA downstream 106274 16023195 ~ 16039984 (+) False LOC113540079
XM_026936291.2 mRNA downstream 123284 16040205 ~ 16050628 (+) True htra3b
XR_004578093.1 other upstream 1245419 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 1635015 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2184901 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2342089 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 2429318 13470769 ~ 13475037 (+) False LOC113539889
XR_003403994.2 other downstream 106274 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 393292 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 451035 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 843598 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 843828 16760749 ~ 16760819 (+) True LOC113540741

Expression Profile