RNA id: XM_026936106.2


Basic Information

Item Value
RNA id XM_026936106.2
length 5801
RNA type mRNA
GC content 0.44
exon number 19
gene id lpin2
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 22808862 ~ 22837839 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCCAAGTGCACACAGTCTGTGAGGTATTAGTATGACAGGGAAACAGAAGCTCTTGGAAGAGTTTAAAAGGTCAAAAATGCACGCAAGGTGTTAGCTGTAATGAAGCGATTGCATTCTTGGGTAGAATTAGACACCCCCTGCAGTGGGACTGAGGAAGACAACAGGGAGCAGGACGACTCTTCAACCCTAAAGGCATCCTGGTCTTTTGTAGACACCATGAACTATGTGGGGCAGCTGGCAGGGCAGGTGCTGGTGACGGTGAAGGAGCTGTATAAGGGCATTAACCAGGCCACGCTGTCGGGCTGCATTGACGTGGTGGTGGTGCGGCAGAAAGATGGGACCTACCAGTGCTCTCCTTTTCACGTGCGCTTTGGGAAACTTGGAGTGCTGCGCTCCAAAGAGAAAGTGATTGACATAGAAATAAATGGAGAGCCGGTGGATCTACACATGAAGCTAGGAGACAATGGGGAAGCTTTTTTTGTCCAGGAAATGGAGGTGCAGGATGAAACAGTCCCAGCTCACCTGGCCACCTCTCCAATCCCCACTGAGAGTCACATTTTCTGGGTTGGGAGCGATAGAGGTACGACTCAGGGTCTGGGCAATGATCCGCTGGACCTTGAGGAGCCTCCTGAGCCTCCGGTGCCCAATACAGGGAcagccaagaagaagaagaggcgGAGAAGGAAGCATAAAGTGGACCCTCGGCGTGAAGAGATGACTCCTCCTGCCTCTGTTGGTGCCTCTGCCAACACAGAAGACATCTTTGAAATGGATCTTAGCACTGATGAAGAGGCCACTCCCAGCACACGATCATCATCAATTAGCACATTAAAAGAGGTTGAACCAAGAGTACCAGCAGTTCGTCATTCTCCGGAGAGCTACCCTTATTCTGATGGAGACTGGTCACCTACTGACAGTCACGCCATGTCTGAGGCCTTCTCCCCCAAGAGTGACTCTGAGCTGGTGATTCGGCCCTCAGAGAGCTTGCTGAAAATGGAGTCTCATATGCAGTGGACATGGGGAGAGTTCCCAGAACCCACCAGGATGGCCaaaaaagacaagacagaaCTGCCCAAGACTGTGACCATAACCCCATCAGAGAACACTCACTTCAGGGTGATCCTGAGCTCTGAGGCCATGGAGCCTGAGGCTGATGTGAAAGACATACTGGAACCTGCACCCATATGCACTATTGTAAAGCCTGAGCCTCGTACTCCAGCTACCCCTATCACCCCGCTAATATCTTCTGACTGTGTGACCACCTCCACGCCCTCAGAGTCCCATACTGCAGCCCCGAACCCTCAAGGTGGAGCCATGATCGATGTCTGCCCAAAGACAGACTCTCCTTCCAAGAAGAAAGGAGTACCAAAGAGAAGTCAGCACCAGGGGCCTGAGGACATCTACCTAGATGATTTGAATGTGCTTGAGCCTGATGTGGCTGCACGCTACTTTCCCAAGAGtgactCAGACTCCAAGCACTGGATGGATTCAGGGATGCGTTCAGGTTCTCAGTCCCCTCAGTCAGTGGGCAGTGCTGCAGCTGACAGTGGAACAGAATGTCTGTCTGACTCGGCCTCTGACCTGCCCGACgtcacactctctctgtgtgggGGGCTTAGTGAGAATGCAGAGATATCCAAAGAGAAGTTTATGGAACATATCATCACTTATAATGAATTTGCTGAGAATCCAGCCATTATAGACAATCCTAATTTAGTGGTGAAAATAGGGAACAGATACTACAACTGGACATTAGCTGCACCGCTAATTTTAAGCCTACAGGCATTCCAGAAGAATTTACCCAAAGCTACAGAGGAGGCCTGGGTTAAAGAGAGGATGCCAAAGAAGTCTGGCCGCTGGTGGTTCTGGCGGAAAAGAGCAGACAGCACTATCAAACAGTCTGAGAATGCAGGAAAACTGGAGATGAAGGAACAGCGACTGAAAGAGGGAGAAGCCTCCCTGGAAAATGATCCCTGCAAAGTGGAGTCCAGAGAATCATCCAGTGATGAAGAGGGGAAGGAGGTGAGTGCAGCTGCTGCCTCTCTGGAGCGCTCGGCTCAGACTGAACCCCAGCCTCAACCTCAGCCTAGCACACACTCCTACAGGAAGTCGCTGCGCCTCTCTTCCGACCAGATTGCCAAACTAAAGCTGAAGGACGGGCCCAATGATGTCACCTTCAGCATAACCACCCAGTACCAGGGCACATGCCGCTGTGATGGCACTATCTACCTGTGGGACTGGGATGACAAGGTCATCATTTCCGACATCGATGGCACCATTACAAAATCAGACGTGTTTGGGCAGATTCTGCCTCAGCTGGGGAAGGACTGGACTCACCAAGGCATTGCCAAACTTTACCACTCTGTAGCTGAGAATGGCTATAAGTTTCTCTATTGTTCAGCAAGAGCTATTGGCATGGCCGATATGACTCGGGGCTATCTGCAGTGGGTGAATGATGGCGGCACTATTCTGCCCCGTGGACCCCTCATGCTTTCTCCAAGCAGCCTCTTCTCCGCATTTCACAGAGAAGTGATTGAGAAAAAGCCAGAGATTTTCAAGATTGAATGTCTTACTGACATCAAGAACCTGTTCCATTCCAACAAACATCCCTTTTATGCTGCATTTGGAAACAGGACCAATGATGTTTTTGCGTATAAGGAGGTTGGAGTGCCTGTTTGCAGGATCTTCACCGTCAACCCTAAAGGAGAGCTAATTCAGGAGCAAACCAAAGGAAACAAGACCTCGTACAGCAGGCTGAGTGAGCTGGTGGAGCATGTGTTTCCATTGCTGAGTAAAGAACAGAGCTCGGCGTTCAGCTTCCCCGAGTTCAGCTCGTTTTGTTTCTGGAGGCAGCCCATCCCTGAGATCAACCCAGACGACTTGCTCTCATAGGCTCGACATGCTCTCCGTCTCCGTCCATTTGCCGTTCTATGGGCTGAAGTAATATTCCTCTAAGATAATTAGGTGTAATCCTTGCAAATCCAAAATTTCTCACTAACTGCACTCTAACCAGCTGAGGCATGTTCTGGTTGTAAAGGATTGTATAAAATCCATCTGCACATCCAAAACTGAACCATGCCTCGCTCTCCCCTTTAATCTAATGTCCACGCTGAACTGTGGGGGAGGTGATGGTGCAGTTTTCCCTCATTGTCTCACACATCAGGGATATTTGAAGCCTGCCTGGGTGCTGAGGCCTCTAAAAGATACTCTTATTTCAAAGTTTCcagtttattgtgtgtgtgtgtgtgtttaattacttaaaatagGGGTATCATAGCCTTAGTGCTGGTCTGTCTGATACTGGTGGACAATTTAACAAGGATTTTTGCCCCTCCACTACAAGCATAGGTATTTATCCCTGCTGTGGTGGTCCAGCGTAGGCTGGTGTTTACAGTCCTGTGGCCTAAGCACTTAGTAGTTACTGTGTGGGTACAGTGACACAGTGTGTTCAGTAGGAAACAGAAAATGAGTCATGTGGGAGAACATGTAGGATCACAGAACTAATTAacagagatatttatttacaaacgctaatttatttttgttctctaATAATTAACTATTAAGTTAATTATAATTACTAACATGCACTGCCTCTAATATGTGGTGAAAGAATTCCTGTCTGACTATGTGTCTGTAATGAGGTTTGATCAGAGGCTCTCTTGAATGCTGATGCTGCTATCAAAGTCAGCCATGCTGGTGAACTCTGTTTCATCCTTTCGCAGCGTCTTCAGTCTGATGGTGCATTTAGGCTTTTAGTCCTGCTGGAAAAGCCCTGAGGTCTGAGCAAGGCTTCCATCTGTTTTCCAGGTGTTTTCCACTCGTTAATAATTTCATTGTCTGGCTGCTTTATAATGCCTTACTGATCGCACTTTCAGCAGCAGCCAAGAGAGCACCATGGATCAGCTTGCAGTTAATGAAGGGATGGCCTTATTGTTGGAAGCTTTTCAGCAGCCTTTTGCGTGGAAGGCTTAAAAGCCTTTTCTTTCGTGAGGCTAAAATAAGACTTGAGTGTTTTTGAACTGCAATGCAGGTAAATCACCCTACTTAATTTGTGTAATCAAAGAAATAGACCTGAAATGCTAATGGGTTTTGATTTCCCAAGATGACTAGTTCTAGTGTGTACTGAATTGTAGCTTTAAcctcatttgattttttttactagtaTGATGAAGTAGTGGTATTAGAGTTTTAGTTCTGTGTTTTGAGATATTTTCAAGCCTTCAGGTCTATAGGtaaatgatgtttttgtgctgaGGAAGACAGCTATCAGTCTGGTCTAGCAGTTATACCACTGTAATGGGccaatttcagtgtttttgaagAACCAGGTCGCAGCTGTTTTGGAAGAGGAGTGTCCCTTATTATTTTTGTGGACATCTTCCGACTGCTGATTCTCTGTGGCCATGGGAAAGAGCACATCCTTGTCATGAATAGTTAATTAACAAAAGCTGGTCTTTGCCTCTGTGTAACAGAAACagtgtattgtatgtatgtatttgtttcTAGGTTCTCCTTTTAAATTTAGGCATAGAGCACCATGTGTTAGGTAGGCATGCACACCAACTCGGAGCACAATAGcaagtaatttatttaaaatagggTATTTGTATGAGGTAACCAttgtttggggggaaaaaagggacTTCCCtggttgtttgatttgtttatgCACAAATGTATTatcacatttgttttttgtctttatgaAGTGTAGAAGTGAAATCTGTCTGTTAATGATTAACAAAGTGATCCCATTCTTTCTATGAAAGTAATACTTCTTGTGTGGGATGGACACACTCATCTATggttataaaaatgttaaaaaaatatatatatatatataaatattaagttGGAACCGATCAGTTATTGTTCATTACTCTTGCTTTCATGCCCTTAAttttatatgcttttatttgttgACGTATGCTCTTTGTggtaaatctgtctcttagaTTGTATTGTTTTCAGTGTAAAAATTGAACATTACTGCATCTGACCACTCTAGATACCTTTAAGTGTATACTTACTGTATGGATCTGTTGTTTtggaaaatgacatgaaaatctattaaaatgcatttattacaaTTGTTTGACTGTTTCACTAACCATCTCACTTTCCCTTACATTTCCTTCAGGAGGATGTTTAGATTTCAGTCAGAGGATTGGAAGACAAGGGTAGACAgtggagaggaaaaagaggTACAGGCAAGTGAGTGGTAGAATGAAATGAATGCTGGAGATTGTGTGGTTTAATCAGATTTGGGAGATTATCACCTCAGGTcaaacattttcttcatttacgtagcagcaaaaaaaaaaagaatattttcatgttttttcttattgCCTTGTCCAGCAGTGTAATAAATAAGATGGAATGTCCAACCCAAAGGCTGTGGAGTTTGTATAAATGGAAATAACTGTCTTCTCTTGGAATGGGAgtgggggattttttttgttgttgttgttttatcagGCATCACATCAACAAGTTAGTTTAGAATTCCTGAAATCACTTGAATCACTAAATTTACAAATCCAGCTGTTCTATTCAGTGTTGGACAAAACAGTGGAGCTTGTTACGGCACTGTTTACaatacaaatattaacaaatcCTTAATTCTTTGTGGGGCTGACTGTTGAGCTTTATTTGTGCTAAATCATTTTACCCCAAACCCTCCCCTCAGTACCTGAATGAGCTTCATGCTGTTGCTTTGTCCTTAAATTCTTGATTTTGGctttatgttggtttatcaTTCCATTACACAATGTTAATAAAAGCctttaccaca

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0008195 phosphatidate phosphatase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82061 lncRNA upstream 160173 22649943 ~ 22652447 (+) False LOC113540463
TU81842 lncRNA upstream 285064 22527328 ~ 22527556 (+) True G68999
TU81788 lncRNA upstream 415519 22392839 ~ 22397101 (+) True G68954
TU81789 lncRNA upstream 424875 22383094 ~ 22387745 (+) True G68955
TU81775 lncRNA upstream 567795 22244588 ~ 22244825 (+) True G68947
XR_003404049.2 lncRNA downstream 88971 22926810 ~ 22938741 (+) True LOC113540593
TU82192 lncRNA downstream 164159 23001998 ~ 23004102 (+) True G69294
TU82369 lncRNA downstream 446715 23284554 ~ 23284926 (+) True G69443
TU82375 lncRNA downstream 453571 23291410 ~ 23291998 (+) True G69449
TU82453 lncRNA downstream 493194 23331033 ~ 23331529 (+) True G69514
XM_026936914.2 mRNA upstream 6686 22776639 ~ 22805934 (+) True myom1a
XM_026936916.2 mRNA upstream 6686 22776640 ~ 22805934 (+) False myom1a
XM_026936082.2 mRNA upstream 37866 22770973 ~ 22774754 (+) True bag1
XM_026936922.2 mRNA upstream 43549 22766263 ~ 22769071 (+) True chmp5a
XM_034303351.1 mRNA upstream 55291 22749865 ~ 22757329 (+) True oprk1
XM_026936345.2 mRNA downstream 162072 22999911 ~ 23038154 (+) True yes1
XM_034303646.1 mRNA downstream 216661 23054500 ~ 23103788 (+) True LOC113540574
XM_026937129.2 mRNA downstream 267784 23105623 ~ 23109703 (+) True si:dkey-32m20.1
XM_026936910.2 mRNA downstream 286341 23124180 ~ 23144086 (+) True cacnb2b
XM_034303413.1 mRNA downstream 344031 23181870 ~ 23201969 (+) True si:ch211-106h4.4
XR_004578015.1 other upstream 1050319 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 480665 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 1270956 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 2021187 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 2869988 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 3060296 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile