RNA id: XM_026936115.2


Basic Information

Item Value
RNA id XM_026936115.2
length 2434
RNA type mRNA
GC content 0.43
exon number 4
gene id ovol1a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16291819 ~ 16298721 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGTCGGGTTTGTTGTCACCGTTATTTCCAGGCGCATGCGCGCTGCCACCTGTTTCCTCCTGAATGTGTACCTGCGCTTCAATCAACCTTTGAAATTCGTTGTGCTGTGACTCAAGTGAGCGGATCGAAATATTTCCTCCATCGTTGTGCGCTGGTAGAGCTATCAAACCGGCGCTCGGACGGCCAGCATACGCACATTTGGTTAAAGGAACCAGCTCTGAGCGTGGAAGTTACGGAAGAGAAGGCAGGGCGCGCAAAAGTGGACAAATGGTGGGAGACGCCACAGGAACCTGTAGCCTATAGGTACAAAAGTTTGTAGAGGCAGTGAGAAGGGAGGAGAACGAAACAAAACCGTCAGAGTCTCCATTAAAATCGGCTACTCACCGGACCTCGTCCTACAAGCAGATCATTTATTAGCTGTATCACCTGTGTGGGTAATTTCAGTAGCTTGTAGGTGAGTAGTGTATAAAGACTACAGCGCTGTAGTTAATACAATAGGGTgttgtagagagagagagagagagagagagagagagagagagagagatagcggAGAGCCACCTGGAGAACTCAGCATGCCACGAGCATTCCTGGTGAAAAAGCCCAGTGTTTCACCCGGCAAGAGGAGCTGGAGTGATCTACCTGACCATGAGCGAGGAGACATTTACATACCAGTCTCTGTGTCCCCTCCAGCTCTGTGGGAGGAGACAGAGGCAAGTACAGCTGAAGTGGCCCTGTGCCTGTCCACTCATAAAGAACACAACAGATGTACACAGAAATACATGCTAGAGCCCTACACTGTGGTTTCTACAGCTGAACTGCCCTCCTGCACCGCTCTGGGACAGCAGCCCAGTCCTGAAACAGAGTGCATCCGAAGTACACAGAGCAGCACATATGTCCGCTCCAAGATCAAGgTGACAACAGGTGAGCTCCCTGTTGAAGCTCCACGTAACATTCTGAGCACAAATGCTGATCCTCCTGTCACTGTGGCAAACCCATCTCCCACAACCAGCAGTGGGACATCTTCTGCACCTACAGCAGGGGCAACCTATGCATGTCAGGTGTGCCAGAAAGTGTTTCAGTACCAGCGCATGCTCAACAGACACCTAAAGTGTCACAGTGAACAGAAACGGCATTTGTGCAGTTTCTGTGGCAAGGGTTTTAATGACACCTTCGATCTCAAGAGGCATGTGCGCACACATACAGGTGTTCGTccatataaatgtaatttgtgTGAGAAAGCCTTTACCCAGCGCTGCTCTCTGGAATCCCACATGAAGAAGATCCATGGTGTGACGCAGCAGTATGCCTACAAGGAACGGCGCACCAAGCTCTATGTTTGCGAGGAATGTGGCCACACTGCTTCTACTCAGGATTCATTGTTGCGCCACATCCACAATCAACACCCAAACAGTGCCTTCTTGCGGGCCAAGGGGGCACGTAGACATTCAGGGGCAGCAGGTGTGGTTGGACGGGAGGAAAACTCCCTGCCTGGCTCTCCTTTATCTCTGAACAGTGATGACACAACAGGATCAGGAGGAAGGTAGAAAGAGCTGAGGTTGATTGagacataaaataatattgtCATAATATACACATCTCTCACATTATGTCAACTGGATCATATgcgattttatttaaaataagacaAGTGAGAAAGTAAAACTGGAACCCTAACGATACAGTGAAGTAAAATGAAATGGTACAATAAGCAAAGTGAAAGACTTTGACAGACTAGATGAACTGATGAATGAGTTTCAAGCAGTGATCGTAGATTAAGTTTGAGTTTACACATTCACTACAGATGAGGGCTGGTTCTTCGCTTTGAAATCACTAAACAGCTAAATAATGATTATGCACTAGTTGATTctgaaaaactttaaaaagaaaagactaTGTAAATAGTACTCCATTTTTGCTCAGGGGAGAAACaataaagaacttttttttttctaaatattgttatattagaaattgttatatatataatgtcctATTTTGTTGCAAGGAATTTCTGAAGAGGGAATGGTGTTCGGTCAGTAATTATTGATGTTTGTAATATATACTGTCAGATGTGTGAagaaatgtgtatttatcaagGTGGTGTGTAATATTCTTTTGGTGGAGTTTATCACTTTTTCcagattttatacatttataataacatataaatCTTTGTACATAATATGAACATAGATtcacattttcatattcattataGGCTATCCTCAAGGGTAAAAGATGAGATCTGTGCTCACTGCAGTTACTGTCTGACATCCTAACAGTAATAATGCTGATTTGTCTTCAGGCCTAATAGTTTAACTAGAGGAACTGAAATACTGTATGGAACTTTACCACATAACTTTTTAACGTGAATGTGctttctgtataaaataaacaataaactttttattttatggtaCAAATACTGAA

Function

GO: NA

KEGG:

id description
K09216 OVOL; ovo

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77337 lncRNA upstream 60704 16223418 ~ 16231115 (+) True G65335
TU77172 lncRNA upstream 228358 16062088 ~ 16063461 (+) True G65199
TU77152 lncRNA upstream 236674 16019857 ~ 16055145 (+) True G65184
TU77137 lncRNA upstream 290358 16001155 ~ 16001461 (+) True G65170
TU77079 lncRNA upstream 421048 15869198 ~ 15870771 (+) True G65115
TU77409 lncRNA downstream 93408 16392129 ~ 16392363 (+) True G65382
TU77422 lncRNA downstream 131740 16430461 ~ 16430686 (+) True G65395
TU77544 lncRNA downstream 133224 16431945 ~ 16442900 (+) True G65495
TU77609 lncRNA downstream 215916 16514637 ~ 16514841 (+) True G65542
TU77650 lncRNA downstream 270966 16569687 ~ 16577737 (+) True G65580
XM_034303836.1 mRNA upstream 7535 16278990 ~ 16284284 (+) True LOC113539958
XM_026936367.2 mRNA upstream 14325 16264254 ~ 16277494 (+) True si:dkey-9k7.3
XM_026936368.2 mRNA upstream 27622 16256665 ~ 16264197 (+) True tkfc
XM_034303466.1 mRNA upstream 87617 16197701 ~ 16204202 (+) True LOC117597006
XM_034303835.1 mRNA upstream 139382 16145424 ~ 16152437 (+) True LOC117597111
XM_034303998.1 mRNA downstream 1220 16299941 ~ 16310157 (+) True mus81
XM_026935826.2 mRNA downstream 11492 16310213 ~ 16319166 (+) True LOC113539780
XM_034303999.1 mRNA downstream 12493 16311214 ~ 16319166 (+) False LOC113539780
XM_026936976.2 mRNA downstream 44623 16343344 ~ 16349401 (+) True fis1
XM_026936718.2 mRNA downstream 54040 16352761 ~ 16355963 (+) True cldn15a
XR_003403994.2 other upstream 251835 16023195 ~ 16039984 (+) False LOC113540079
XR_004578093.1 other upstream 1632883 14632030 ~ 14658936 (+) False zgc:194930
XR_004578085.1 other upstream 2022479 14255744 ~ 14269340 (+) False brms1
XR_004577999.1 other upstream 2572365 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 2729553 13558623 ~ 13562266 (+) True cited1
XR_004578074.1 other downstream 11492 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 69235 16367956 ~ 16370684 (+) False LOC113540582
XR_003404110.1 other downstream 461798 16760519 ~ 16760583 (+) True LOC113540740
XR_003404111.1 other downstream 462028 16760749 ~ 16760819 (+) True LOC113540741
XR_003404115.1 other downstream 462260 16760981 ~ 16761107 (+) True LOC113540745

Expression Profile