RNA id: XM_026936118.2


Basic Information

Item Value
RNA id XM_026936118.2
length 2352
RNA type mRNA
GC content 0.43
exon number 5
gene id gba3
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18426358 ~ 18430359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAGGCTACGCACACGCTGTACGTGCTGACGCTCCACGCTGGATTTCCTGGTGCTGTAAAGACGGCGGCAATTAAAGTTGCGCTATAACAGTGAGTGACAGGTGAAAGAAAGGCTGTAGTTCGCCTGCTACTCACTGCTAAACGCACGCAAAATGGctcttaataaaaatatgtctGTCGAAGGTTTTCCAGCTGACTTTGCATGGGGAGCTGCAACAGCCGCTTACCAAATCGAAGGGGGCTGGGATATGGACGGTAAAGGCCCCAGCATATGGGACACTTTTTGCCACAGTAAAGGCCGAGTGTTTGAGGATCACACTGGAGATGTGGCCTGTAACAGCTACCAGCTTTGGAATGAGGACCTGAAGTGTATCCAGCAGTTAGGCCTCACACACTACCGTCTGTCCTTCTCCTGGTCACGGTTGCTTCCTGATGGAACCACACGTTTTGTCAACCCACAAGGTGTAGGATACTATAACAAAGTGATTGATGACCTAATCGCAAACGCTGTTATGCCCATGGTCACCCTGAACCACTTTGACTTGCCTCAGGCTCTGCAGGACCATGGTGGTTGGAAATCTCCAGAGATTGCAGATGTTTTTGACTCGTATGCTCAGTTTTGCTTTAAGACTTTTGGGGACAGGGTGAAGCTTTGGATTACACTGAATGAGCCGTATGTGTGCGCTAAACTTGGGTATGAGAATGGCCTTTTTGCCCCTGGCCTTAAAGAACCAGGGACCTCAGTCTACCTAGTTGGTCACAACATGCTGCGTGCCCATGCTAGAGCCTGGCATAGCTATAATGCCCACTTCAGATGCCTGCAGGGAGGAAAGGTGTCCATAGCTCTTAACAGTGACTGGGCTGAACCTTTAGACCCATGCTGTTTTGAAGATGTGGCTGCCACTCAGCGATACATGGACTTTAACCTAGGCTGGTTTGCTTGCCCAGTGTTTGGCACAGGGGACTACCCAGAGTCCATGAAGTCCAGGATTGAGGCCCAGAACCTTAAACTAGGATTTACTGAGGGGGAGCGTTTGCCCAAGTTTTCAGACGACGAGCCCAAGCCCTTAGGCACAGCAGATTTCTTTGCACTGAACTACTATACATCACGCAAAGTGAAGGACGCAAGCTCTCGTCCCAGTGATCTCAGTTTCACAGGGGACCAGGGAGCAGAGGCTATAATAGATCCATCATGGCCAGTGAGTGGTGTGTCCTGGCTTGCTGTCGTGCCTGAAGGACTGCGCAAGTTGCTAAAATACACAAAGGAGACTTACAACAACCCAGCCATTTACATCACTGAAAATGGCTTCTCACAGATAGGGCCTGTGGAATTCGAAGACATTGATCGCTGCCAGTTTTATCAGGATGTACTTCAGCAAGTATCAAAAGCTATCACAGATGatggtgtgaatgtgagagGATATTTTTCCTGGTCACTTCTGGATAACTTTGAGTGGTCAGATGGTTTCAGTGTGAGATTTGGCCTCTTCCATGTGGACTTCTCCAGCGCTGAGCTAAAGCGCACCATGTACCGCTCTGGTAGAGAGTATGCAGCTATAATAAAAAGATACCGCACCTATAACAAGCTGGACAGCTGAAGTCAGCACTCTGATATCTGTACTAGACACTAATTTGAATGTTTGAACACTTGAATAGCACCAAGAACAAACAAAGTAGTTgaaatttttatgattttattgaCTAATTTAGTAGTTTGTAAAATCCAGAAATATGCAAACTATAGAATATAGACCTGTAGCACTTTTTAATGCACTATGAGTAATGTATGTTTAGCTGAtccaaggattttttttttatacaaggTGTGATAATTTTGATTGCAGAGGAGCTTTTACAATAGCCTGTCacaaaaaattgtgtaaattgtgAATTTTGGAATCCATGAAGAATCTATACAGTACATatgcagtactgtgcaaaagtcttggtcaccctgttttgttttgtttttaagttcaaatgttgttatagatgtttatttagtgccTTCTGTAtaattgagtcagtacaaaaaacattttagatttccaaacattaattttccagTAAAAAGTTAAATGTTACAGTACAATGTTTGTCAGTAAACAAAGCGACATATTACGTACAAGACCACTTTTCGAATAAataacataatgaaggctgctgggttttgcatgcaaaaaaagaagtcaGAGTCTcaagaagaactgtggctggttctaaAAGATGCTCTGTAAAACTTAtaagctaatttccttataaaactgcactaattatACCtgagactattaatttaaaaaagcgAAGTTAACAGATGTTgcctttgtttagtttattactgtttactgctc

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function

KEGG:

id description
K05350 bglB; beta-glucosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79006 lncRNA upstream 44196 18381956 ~ 18382162 (+) True G66637
TU78810 lncRNA upstream 248716 18177234 ~ 18177642 (+) True G66452
TU78778 lncRNA upstream 314443 18111685 ~ 18111915 (+) True G66426
TU78533 lncRNA upstream 329775 18091588 ~ 18096583 (+) True G66263
TU78493 lncRNA upstream 434111 17990435 ~ 17992247 (+) True G66237
TU79026 lncRNA downstream 203 18430562 ~ 18431136 (+) True G66654
TU79045 lncRNA downstream 61013 18491372 ~ 18491581 (+) True G66670
TU79140 lncRNA downstream 238683 18669042 ~ 18669250 (+) True G66754
TU79242 lncRNA downstream 397820 18828179 ~ 18833827 (+) True G66855
TU79254 lncRNA downstream 428683 18859042 ~ 18862711 (+) False G66865
XM_034304071.1 mRNA upstream 182561 18221624 ~ 18243797 (+) True sec24d
XM_034303317.1 mRNA upstream 282727 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA upstream 282727 18113444 ~ 18143631 (+) True frem1a
XM_034303316.1 mRNA upstream 282727 18113473 ~ 18143631 (+) False frem1a
XM_026936698.2 mRNA upstream 343928 18049289 ~ 18082430 (+) False rap1gds1
XM_026936168.2 mRNA downstream 418806 18849165 ~ 18851580 (+) True sod3a
XM_034303649.1 mRNA downstream 520688 18951047 ~ 18954000 (+) True ppp1r15a
XM_034303737.1 mRNA downstream 740340 19170699 ~ 19327377 (+) False LOC113540597
XM_026937175.2 mRNA downstream 740340 19170699 ~ 19327377 (+) True LOC113540597
XM_026937171.2 mRNA downstream 740340 19170699 ~ 19327377 (+) False LOC113540597
TU78855 other upstream 217794 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 295853 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 415396 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 661824 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 806279 17609704 ~ 17620079 (+) True LOC113539940
TU79253 other downstream 426097 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 1397952 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 1398460 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 1670666 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 1717436 20147795 ~ 20154771 (+) False fcer1g

Expression Profile