RNA id: XM_026936120.2



Basic Information


Item Value
RNA id XM_026936120.2
length 1643
RNA type mRNA
GC content 0.46
exon number 10
gene id nagk
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14035207 ~ 14039607 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


TTCGCGTTTACGGCAGGGCACGAGCGATAATCTGATTGGTGGAAAATAGACCTGCTTAACACGTCATCGTCTTGTCACGAGGAAGAAACAGGAAGCGGTAGAAATGAGTGCGGTGTATGGAGGTGTGGAAGGGGGCGGAACTCACTCCAAAGCAGTGCTGCTCTCCGCTGCAGGGGAGGTCCTCGCTGAGACAGATGGACCCTGCACCAATCACTGGTTGGTTGGTGTTGATAAGTGTATCGAGGGCATTAACGATATGGTCCAGAAGGCAAAGATCAGTGCCGGGCTGGATCCCAATACACCCATATATTCTCTGgGCATGTCGCTGAGTGGTGGAGAGCAGAAGGATGCCATTCAGAAACTGATTGATGAGATGATGGAAAAATTTCCTAAACTAAGCCAGAATTATTACATTACCACAGATGCCATTGgtgccatggcaacagcaaGTGGCCATGGTGGTATAGTACTGATATCAGGAACTGGTTCAAACTGTAAGCTGGTGAACCCTGATGGCACTCAGGTGGGCTGTGGAGGATGGGGTCACATGATGGGAGATGAAGGCTCTGCATTTTGGATCTCTCATCTTGCTGTAAAAGCAGTATTTGATGCCAGAGATAACCTGGTCACACCTCCACATGATATCACCTATGTTAAAAAAGCCATGGAGGACTATTTCAAGGTGTCAGATCTGATGGGCATGCTCCCCCACCTGTACAGAAACTTCCAGAAATCATATTTTGCTGGCTTCTGTAGAAAACTGGCTGAAGgtGCTAATGCAGGTGATGCCTTCTGCCGATACGTGTTTACCCAGGCTGGTAAAGTGCTAGCACAGCACATTGTAGCAGTGCTGCCCAACGTGCACCAGGAGCTGTTCTTGGGTGACCTTGGCCTGCCCATTCTGTGTGTTGGATCTGTATGGTTAAGCTGGGAGCTGATGAAAGATGGTTTCACTCAGGTCCTCTCCCAGGCCAAACTGTCTggttacagccattttcagaaCTATAGCCTTCTCACCCTACGCCAGTCGTCTGCTGTAGGTGGTGCCAAGCTGGGAGCCCAGAATGCAGGTGCCACCTTGCCCCTGGACTACTCCACTAGTGCCAGCGTGTTCTTCAGCCACTCGTTCACTGAGCAGTGATCAACACTAATGAGGACCAATCAAGCTGGAAACACTGCTCCctgtttttatacatatttgGCCCCAGTGCAGTATAGTACAATCAGAAAAATACCTCGACTTAAACTGGACATTGCTACGTAGTATTTCATGTGATCTGTACACCTCTGTATAATGTCATTCAGTTTACATGGCTCTTCGGCAGCAATCTGGGCATTAACCCAGTGAAAGGGAGAAGGTGAAGTTGCTGGGAGCGCGAGAGTTTATAGTTCTTTACATTAGAATTAGGgtcactaaatgcaaaaaaacttTAATTGCTTCCACATTTCCTATTTCCTattttgaatataaaaatgaatgctGTTCTGAGATGTATCTGTCCCCCGTGCACTAATTGTGAAATAACGTAAAatactaattttaatatttttatacagtatcTAAATGTCTTATCATAAAAATTGCAAGAGCAAGTGTATGAGGCCTAAGACCTGATTAAaaatcttgattaaaaaaagcatta

Function


GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K00884 NAGK, nagK; N-acetylglucosamine kinase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU75936 lncRNA upstream 17538 14017286 ~ 14017669 (+) True G64105
TU75934 lncRNA upstream 21789 14013219 ~ 14013418 (+) True G64103
TU75933 lncRNA upstream 22892 14012098 ~ 14012315 (+) True G64102
TU75876 lncRNA upstream 125748 13903441 ~ 13909459 (+) True G64049
TU75843 lncRNA upstream 275456 13755544 ~ 13759751 (+) True G64025
TU75926 lncRNA downstream 2361 14041968 ~ 14042414 (+) True G64095
TU76204 lncRNA downstream 16920 14056527 ~ 14056887 (+) True G64308
TU76367 lncRNA downstream 255395 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 256663 14296270 ~ 14296472 (+) True G64462
TU76581 lncRNA downstream 640599 14680206 ~ 14680813 (+) True G64668
XM_034303361.1 mRNA upstream 19082 13973996 ~ 14016125 (+) False m1ap
XM_034303356.1 mRNA upstream 19082 13991927 ~ 14016125 (+) False m1ap
XM_034303360.1 mRNA upstream 19082 13992582 ~ 14016125 (+) False m1ap
XM_026936151.2 mRNA upstream 19082 13992715 ~ 14016125 (+) True m1ap
XM_034303359.1 mRNA upstream 19082 13992715 ~ 14016125 (+) False m1ap
XM_026936442.2 mRNA downstream 24887 14064494 ~ 14080036 (+) True hspa12b
XM_026937054.2 mRNA downstream 52887 14092494 ~ 14151289 (+) True slc8a4b
XM_034303973.1 mRNA downstream 190366 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA downstream 190375 14229982 ~ 14252612 (+) False ppp1r14bb
XM_026937055.2 mRNA downstream 216137 14255744 ~ 14269340 (+) True brms1
XR_004577999.1 other upstream 315753 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 472941 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 560170 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 616511 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1740084 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 216137 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 592423 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 1983588 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2270606 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2328349 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile