RNA id: XM_026936124.2



Basic Information


Item Value
RNA id XM_026936124.2
length 2487
RNA type mRNA
GC content 0.48
exon number 2
gene id arsj
representative True

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20911650 ~ 20926058 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


tacacacacgcacgcacacatacacgcacgcgCGCGTGTGCGCGCGCTCCGACCATGCCGCGCAGACAGACAGCGCGCTGTGAATGAGGCAGCAGTATGTAGCCCTTCATGAGCCACTTGGACTTCCACAGTGAAGGCGCATGGTGTGAGCGGCGAGGCGCTGAAGAGGCGGCCATGTTGGTGCTCGGGGTTTTGGCCGGATTCTGCCTCTGCAGCGCGGCCGCCTCCGGATACGGGAGATGGACGCAGAACTTTCGCACCAGCTCGAATGAAGTGGACAAGCCCAGCTCGCAGCCGCACATCATTTTCGTTATGGTGGACGACCAGGGCTTCAGGGACGTGGGATATCACGGGTCCGAAATCAAGACGCCGACACTGGACTGGCTCGCGGCTAACGGAGTGAAACTGGAGAATTACTACGTGCAGCCGCTGTGCAGTCCATCCCGCAGTCAGCTCATGACCGGCAGGTATCAAATTCACACTGGGCTCCAACACTCCATAATCCGCCCCACCCAACCCAACTGCCTCCCACTAGAAAACATCACCCTCCCCCAAAAGCTGAAGAATGCAGGATATGCTACACACATGGTTGGCAAGTGGCACCTTGGTTTCTACAAGCGTAGCTGCATGCCTACACAGCGTGGCTTTGACACCTTTTTCGGCTCCCTTCTAGGGAGTGGTGACTACTACAGCCACTACAAATGTGACAGCCCTGGAATGTGTGGCTTTGACCTGCATGAAGGCGAGGAAGCTGCGTGGGAGCAAGACCGAGGCATCTATTCCACCCACATGTATACTCAAAAGGCAGTACGTATTCTAGCATCACACAACCCCAGACAACCTATCTTCCTGTACCTGGCATACCAGGCAGTGCACTCGCCTCTGCAGGTTCCCGCTCGCTATCTGGAACGCTATAAATCCATCCCAAATCTGCAACGACGCAAGTACGCAGCCATGGTCAGCTGCTTGGACGAGGCTATGCGCAACTTAACTCTTGCACTCAAACGCTATGGCTACTATGACAACATGGTCTTGGTGTACTCTTCGGACAATGGGGGTCAACCTCTGGCAGGTGGCAGTAATTGGCCACTAAGAGGTAGTAAGGGAACTTACTGGGAGGGTGGTATACGGGCAGTGGGGTTTGTGCACAGCCCCCTACTTGTGAGGAGAGGTACTTGTAAAGCCCTAATCCACATTACTGACTGGTACCCTACCCTGGTAACACTTGGTGAAGGTACGCTTGATGAGAATCAGAACCTGGATGGCTATGACGTTTGGGAGTCGATCAGCGAAGGGCTCCCATCTCCACGTCATGACATTCTCCATAACATAGATCCCATCTTCACCAAAGCTAAGAATGGCTCCTGGAAGGCAGGATATGGAATCTGGAACACAGCAATCCAGGCAGCTCTCCGTGTTGGGGACTGGAAGCTCCTGACAGGTGTTCCAGGCTACAGCGACTGGGTTCCACCACAAACCTTTTCCAACCAGATGTTGAGCAATCGCTGGCACAGTGAGCGTGTGCGCTGGGATCGAGGCAAGACGATTTGGCTGTTTAACATCACAGCTGACCCTTTTGAGCGTGTGGATCTGTCGAGGCGTTACCCACACATAGTGAAAAAGATGCTACTCAGACTTTTGCATTACAATAAGACAGCTGTGCCATGCCGCTACCCACCCAAGGACTATCGGTCCAATCCTCAGTACAACGGAGGGGTCTGGGGACCTTGGTACTCAGATGTTGATGAACAGGAGAATGAAAATAATAGCATTCTTGCCAATAATTTACagaagattaaaaaagagaaaaaagcgaAACATAAAGGGAAGTTGAAAAGGAAAGCTGAAGACTTCTTGGTCCTTCATTTGCAGTGACTTATGTTTTCCCTTTAAAGACTCCAGTACTCagggactgacaggcagacgTGATCTGTTCACATGATTTTTCACTGACAGAGTTTTATATTTCGATAGATTTACCTCTAGTTAGATATTTTAGATGTAAGCAACAGGAATCGGTTGTTATGCTTCTGATTCTTATGAAGAAACCCActtaaacactgctgtttttccAGCTTAGAATTGGACAATGTTTCTTAGAGCTTTaagaaaaagatatatatatatttatttttaacattttattgcatGCTCAACCTTCCTTGGCCTTCATATTGTTTTACGACTTGTAGATTAATAATAGGTTCGAAAGAAATTACAATATATATCAAATAAGAGGCATAATTGTTTGTCAAACTAATCAAATAAGGAAGAATATTACATTCTGTGCCTTAGCAGATGCAGTTTATTCCCAGAATCAAAACCACATAAAACAGTAGTTTTACTGATAAACCTTAATATAATTGACGTTTCACACTTAGAATTTTCCAGTactgtgtttgtcttttgtttgttcttttgtgTTGTGTGGTCCAGTACCAGTTAAAGTTGAATgtaaagcaataaaacaaaaatgtgaacTCTTCA

Function


GO: NA

KEGG:

id description
K12375 ARSI_J; arylsulfatase I/J

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU80850 lncRNA upstream 15695 20864878 ~ 20895955 (+) True G68192
TU80696 lncRNA upstream 218539 20692263 ~ 20693111 (+) True G68070
TU80695 lncRNA upstream 218597 20692263 ~ 20693053 (+) False G68070
TU80678 lncRNA upstream 276085 20635348 ~ 20635565 (+) True G68054
TU80554 lncRNA upstream 429895 20480600 ~ 20481755 (+) True G67958
TU80969 lncRNA downstream 262473 21188531 ~ 21189134 (+) True G68299
TU80981 lncRNA downstream 279687 21205745 ~ 21209324 (+) True G68304
TU80993 lncRNA downstream 307967 21234025 ~ 21234258 (+) True G68313
TU81190 lncRNA downstream 390197 21316255 ~ 21316515 (+) True G68435
TU81189 lncRNA downstream 395087 21321145 ~ 21321406 (+) False plag1
XM_026936148.2 mRNA upstream 18119 20852744 ~ 20893531 (+) False pde5ab
XM_026936149.2 mRNA upstream 18119 20862438 ~ 20893531 (+) False pde5ab
XM_026936146.2 mRNA upstream 18119 20865266 ~ 20893531 (+) True pde5ab
XM_026936147.2 mRNA upstream 18119 20865266 ~ 20893531 (+) False pde5ab
XM_026937340.2 mRNA upstream 64672 20843344 ~ 20846978 (+) True LOC113540687
XM_026937309.2 mRNA downstream 9627 20935685 ~ 21012256 (+) True camk2d1
XM_026937311.2 mRNA downstream 9627 20935685 ~ 21012256 (+) False camk2d1
XM_026937308.2 mRNA downstream 9627 20935685 ~ 21012256 (+) False camk2d1
XM_026937310.2 mRNA downstream 9627 20935685 ~ 21012256 (+) False camk2d1
XM_026937313.2 mRNA downstream 9628 20935686 ~ 21012256 (+) False camk2d1
trnaa-cgc other upstream 559165 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 756879 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 810552 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 1082760 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 1083268 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 94200 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 401288 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 703018 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 703018 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 826358 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile