RNA id: XR_003403991.2


Basic Information

Item Value
RNA id XR_003403991.2
length 4378
RNA type misc_RNA
GC content 0.42
exon number 4
gene id gal3st3
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9807321 ~ 9832280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTAAAACAAGCGGCCATCAGCGTGAAAACGAGTCCTCTCGTTACGTCACGGCGCCGGGAATAACACGTCGGAGGCTTAAAAGCacgcggtgtgtgtgtgcgtgcgtgcgtgcgtgtgtgtgcgtgtgcgtgtgtgtgtgtgtgtgtgatggagaagtggaGCGAGCAGAATACATGAAGCCTCTTTATCAGGAGCAGTTTAATGACAGAGATGATGTCCCAGAAGAAGATTTTCCTGATTCTGGTGGCAGTTAGTACTGTCAGTTTGCTGTTGCATCAGGGGGGTCACCTCAGCTGGACCATGGAAGTATTCCGAATGAACTGCCCATCCCTGAACCCTCCTCAAACTAGCACCACTTTCAAACACACCAATGTGGTCTTCCTCAAGACGCACAAGACAGCCAGCAGTACTGTGCAGAACATATTCTTCCGCTTTGCCGAACGCAACAACCTCACGGTGGCGCTGCCAGTCACCCATTGTGACCACCAGTTCTGCTATCCGCGCATCTTCAGCAGCCATTTTGTCCACCCCCACACCATGCCGCCGAACATTGTGACCAGCCACCTGCGCTTCAGTCGCTCTGAGTTGCAACGCATTATGCCCAATAACACCATTTACATCACCATCTTGCGTGAGCCTGGTGCCATGTTTGAATCCCTGTTCAGCTACTACAATCAGTACTGTGATACTTTTAAGCGTGTCCCCAATGGTTCTCTGGAAGCATTTCTGGACAATCCCTGGGCTTACTATCGTCCACAGGAGAAAGATTCAATGTATGCCAGGAATacgctgacctttgacctgggCGGCGATAAGGATCGACCGTCTGCAGACGTGGTGAGGTATGCGAAGCGATTTGCTGCAGAAGTGGAGTATGTCTTCTCACTGGTCATGATTGCAGAATATTTTGATGAATCGCTAGTCCTGCTGCGGCATCTGCTGTCATGGGACTTAGAGGACGTGCTCTACATCAAGCAAAACATGCGAATGCCTTCATCTAAAGGCAACCTTTCTGAAGCACAACTGGGCAAAATCCGGGAATGGAATGCTATCGATGCCATGCTGTATGACCACTTTAATGCTTCACTTTGGAGGCAGCTGAATGAACTGGGGCTAGCTTGTGTTGCTAGGGAAGTAAAGCTGCTGCGTCGTGCCCAAGAACAGATGATACGTAGCTGCTTTGGTGGAAATTTGCCTCAGCTACGCTCAGCTGCAGAGATCACCAACAAAGAACTGCGGCCCTGGCAGCCCAGCTCCAAGGTGGCTATTGTTGGGTACGACTTACCTGTCAATGCATCAAAGGAGTCTGGCATGTCAAAGGACATGTGCCTGAAAATGATCATGCCCGAAGTGCAATATTCAAAGCAACTGCTGCACGTGCAGATGCTGCGTTACAGGAGcaggtattttttaaataatgtgctgaAACCCTCTGGCCAGCACCAACAACCCACTGGTTCCATTTTACGTCATTCAGTCACACCGGGGAGGAGCCCCAGAGCACGGTCCTTCCACCAGACACGTCAAGTTGGGTCACACAATTAGTCCCatcgttttctttttttcatcttgtGACACAGACTGCAGGGAAAGAGCTATGAAGCACAGTGAAAGTCCAAGATTATACCAGCCATCTAAAACTCCCTCCTCAGGACCTGTTTACCTGTGCCATTTCAGTGTATGGCTTAAAGAATTCCTCTAATGAGGACTTTGCTAGCTGGATCTGTGAATCTCATAAAGACcagagtatgtgtatgtgtgatgctTTTTGTTAGCTGTAGGATGTGACTGTATAAATACAGCACTCTCTCACgtgaacatgcacacacatacctaCATGGTACAAACATACATTCTGCCTCTGCAAGCACATATCCTGAGGACATACGCTTCATTGCCTGGGTCTTGAGGGAAGAGGGGTTTATCCATAGGTTTACCTTTTACATTTGGCAATAATGTGGCTTCATGACAACATCTGGAGTAGGCACTAGAGGTatttgcatataaaaaaaaactgcaccatTAAAGGGACAGTCAGCAAATTTAGCAGGTAACAGCCTGAGTTAGAGTTTTTAAGTTTTCTAACTTTAAAATCAAACAGCCGTGCTCATCCATGTTTCCAGCCAAGCTACACCCCAAGACATAGAGATGTGTGCTGCCCCGGCTACAATGCCTAAACACTAGTGCAAGAAGTGCTGCGTACTGAATTGACAGGCAATATGATTGACTTCCTTGTcttgattggttggatgttgtgGTCCAcatcctttgttttttttccccagtgtaaAGAATCTGGGGCAGCACAGagactgtgtttttctcctgacTACATTATATTCTCACTTTATCTAAGCAGGCAGAATGGAAGGAGAAAAGCATTCTGACTTGAAATTTATCAGGGCTGTGCTTCAGTCAAATGACAGAAGACATCTGTAAACTCCTTCGTTTGAATCACAAGAAGTTCTTGCCAGACATTGAAGACGCAACCCTCTTATAGGTTGTTGCAGGAGCATGCTGATCAGCTCAGAGCAGAGGATGGCAGAAAGAATTAATgagggacagaaaaaaaaagctaagacAGATGAGAAAATGGACTGTCATGCTACTGTGCAAGACTCACTAGTTTCGGGAAGCAATTTGCAGTAACACAGTGACCTTGAAACCTTCCTCATGACAGGTAGTACAGTGTTTTCACACTGTTGTACAATTACATATAAGGCTTAACTTCTCATCTGCCGACAGTCTCACCGTGAAAGCCGTCCTCACAGCAAATGTACAGGATgtaatttatagtttatatttaatattgaagcTATTTGATTTGCTTTAAAATTTTCTCTTAATGCTGGTACATGATTAGAGTGtattcaggtttattttttGACAACAGGTTTTTTAGTCTTGAGTGTCTCATCTGTGCACCACTggaaaaattgtgtgtgtgtaaacccaAGAATTGTAATACTGCATTCCAAAAATTCAAAAGTCCTcgattttcttttattgtatGTGTAACAGAAGGtcacctattattattattattattattattattattattattattattattattattattattattattatcatcatataCCTAGCAGTATCTGAGAGGCAAGTTGTGCTGTGTCAATCATTTGATTTGCTTCCTTTTTATTATGCACAACTAACAAGCATTTGGAGCATTAGAGCTTTATCAGAATATGATTTTGTACTTTCATGTGATTTAACCCTGCCTGTACTAGGTAATAGACACCACACGTACACCTTGCTTTAAAATGGATTGCAATGTACAACACATAATAAGTGCAAATGATATTCCTCCCATGATAAATGAGTTTAACTAGTATGACAagtcaatttaaaatttatctGTGAAGCCAGTGGTTGTGTagtcacaggtgtgtgtagatGCCTTTGATCCAGTAAATCGAGAGCCGGTCTGCAATGTGAGCTGTGGACAGGGTCATAAACCAAACCATGTGAGCTATGCGCTTTTAAAAATTGCCTgctcttgcaaaaaaaaaaaaggattttttcaTATTGGATTCTAGTTTAGAACTGTTTATTAATGTAGGTCATACTAATACATGtgaacaatacacacacacacttttcatctTCTCTTTCATTTAGGTTAATAACAAAGTATCAAAGATTAGGTGAGAATACTGTCTCGCTGAGTGAGGCGACGCTGTACTAGGCGACGCTGACAAGCACCTGATGCTCACACACATCAGCCAGTTCACACCTCGTTTTCACACTCAGAACTGTGTATCTTATccgtctcacactgttgtgagCAGGAGAGAGCGATAAGATAAACCAGGGCTCGGATACTACTTGAATCATAATAGCGGGATCTTCAAGATCTGAGATTCCTTGTCATATTAATAAGTGCTCttgtattatgaattattacatacatatatatatatagttttttgaGTAATAGAGCGTTTTAAACAGACACCCGTCATCAGCTGGCCAAGCTGTAGGATGTGACCTGCTTCCTTTATTCCTGAattcctaaataaaaaataaattcctttatttttcaatgactaaaaaactgactgaaaacaatgaaattgtactgtatgtgaatATTAGTTGTTgggattttgtcattttgcttgagataaaaaaaaggttctcgGATCTTAAAAGGGTACTCTAATGTATACTGTGCTACTGTTCCCATCAGAtggacataaaaataaaacacgaCTGTGTCGTGTGTGAGACACTGGATTTGTTCTAAGTTCATTTTCAAACGGCATGTTTATTTTGAACAGGAGCTTTAAATAAGATGTTTCtgacaatcagatttaagatgTGTTAAGTTATGTAAAGAGAATAAAACca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU73000 lncRNA upstream 214578 9578364 ~ 9592743 (+) True G61638
TU72958 lncRNA upstream 351161 9449043 ~ 9456160 (+) True G61600
XR_003404086.1 lncRNA upstream 457607 9349502 ~ 9349714 (+) True LOC113540712
XR_004578143.1 lncRNA upstream 464207 9342902 ~ 9343114 (+) True LOC117597235
XR_004578133.1 lncRNA upstream 465349 9341759 ~ 9341972 (+) True LOC117597225
TU73062 lncRNA downstream 48788 9881068 ~ 9968829 (+) False G61689
TU73068 lncRNA downstream 48788 9881068 ~ 9968900 (+) True G61689
TU73079 lncRNA downstream 81955 9914235 ~ 9918783 (+) True G61696
TU73080 lncRNA downstream 81955 9914235 ~ 9917378 (+) False G61696
TU73126 lncRNA downstream 192305 10024585 ~ 10041759 (+) False LOC113540370
XM_026936879.2 mRNA upstream 1980 9776496 ~ 9805341 (+) True actn3b
XM_026937131.2 mRNA upstream 33272 9758460 ~ 9774049 (+) False rbm14b
XM_026937133.2 mRNA upstream 33272 9758462 ~ 9774049 (+) False rbm14b
XM_034303963.1 mRNA upstream 33272 9758599 ~ 9774049 (+) False rbm14b
XM_026937132.2 mRNA upstream 33272 9758663 ~ 9774049 (+) False rbm14b
XM_026936421.2 mRNA downstream 28614 9860894 ~ 9882713 (+) True si:ch211-168d1.3
XM_034303775.1 mRNA downstream 28614 9860894 ~ 9882713 (+) False si:ch211-168d1.3
XM_026937083.2 mRNA downstream 87580 9919860 ~ 9925854 (+) True nit1
XM_034303758.1 mRNA downstream 95041 9927321 ~ 9966832 (+) True clcn3
XM_034303760.1 mRNA downstream 95041 9927321 ~ 9966286 (+) False clcn3
XR_004578067.1 other upstream 33272 9758460 ~ 9774049 (+) False rbm14b
TU72678 other upstream 910592 8894470 ~ 8896729 (+) True G61359
XR_004578049.1 other upstream 1082881 8695352 ~ 8724440 (+) True LOC117597156
XR_003402765.2 other upstream 1744482 8056056 ~ 8062839 (+) False LOC113526345
XR_004578001.1 other upstream 3210760 6595126 ~ 6596561 (+) False LOC117597080
XR_004578013.1 other downstream 28614 9860894 ~ 9881226 (+) False si:ch211-168d1.3
XR_004578014.1 other downstream 28614 9860894 ~ 9881226 (+) False si:ch211-168d1.3
trnas-gcu other downstream 80117 9912397 ~ 9912478 (+) True trnas-gcu
TU73183 other downstream 335566 10167846 ~ 10266279 (+) True G61786
trnak-cuu_4 other downstream 642338 10474618 ~ 10474690 (+) True trnak-cuu_4

Expression Profile