RNA id: XM_026936149.2


Basic Information

Item Value
RNA id XM_026936149.2
length 3534
RNA type mRNA
GC content 0.46
exon number 21
gene id pde5ab
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20852744 ~ 20893531 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTGCTCGCTCAGGACACTGTCTTCTGTAGCATATTTTCTCCAGAAAAGCAGCTTGTGACCCCTGTGATCATTTCCAAGGAGACATGATGCTACGGAGAATGAGGTGCCTGCTGGAGGGAAATGGTCAATGCGTGGTTCGCTGAGCGTGTACATTCCATCCAGCCATCCCGCGAAGTGTCCAAGACACTTACAGACAGCTCGAAAGCTCATCCGGAAGCAAGCACCCTGACCGCTTCAGGCTCCACAGAGACTCCGTCACCCAGTCCTGTTCCTTCTACACCCACACGCAAGATCTCTGCATCCGAGTTCGATCGGCCGCTACGGCCTATCGTGGTGAAGGACGCAGAGGGCTCGCTCACGTTCCTCAGCGACGCAGAACGGGTGCCCATGCCACCTCCGGCTCCTTCTCACAAGCTGGAGCGGACAGGGGGGGACCGTTGCGCCCGTCTTCTCGAGCTTGTGCGTGATGTGTCCAGCCACTTAGACCTGACAGCGCTCTGCCACCGCatctttttacacacacacgagcTAATCGCAGCTGACCGCTACTCGCTGTTCTTGGTGTGTGAGGACAGCTCCAACCGAAAGTTCCTGGTCAGCCGGCTGTTTGATGTTGCTGAAGGCTCCACACTTGAGGAAGCATCCAACAGTGGCATCCGCCTGGAGTGGAACAAAGGCATTGTGGGACACGTGGCAGCCACGGGCCAGCCGCTGAACATTAAGAATGCCTATGAGGATCCTCGATTCAATGCAGAGGTGGACCAGATCACAGGCTACAAGACACAGAGCATCCTGTGTATGCCCataaaaaatcacagagatgagGTTGTTGGTGTGGCACAGGCAATCAATAAGAGGTGTGGCGAGAACAGCACCTTCACAGAACAAGATGAGAAGGACTTTTCCTCCTACTTGGCTTTCTCTGGGATTGTTCTACATAATGCACAACTCTATGAGACATCACAGCTTGAGAACAAGAGGAATCGGGTGTTGTTAGATCTGGCCAGTCTTATTTTCGAAGAACAACAGTCTTTGGAAGTCCTGCTGAGGAAGATCGCAGCCACCATCTTGTCTTTCATGCAAGCTCAGGAATGCACTATATTCATTTCTGATGCTGACACATCGAATGCTTTCTCCAGTGTGTTCCATATGGAGTATGAAGAGCTAGCTGGATCTGTGGATTTCCCTAACAGAGACAGTGATGTAAGTAAGATCAACTACATGTATGCTCAGTATGTGAAGAACACCATGGAGGCACTGAACATTCCTGATGTCACAAACCTGATGTCTGATCAGAGATTCCCTTGGACTAGTGAGAACCCAGACTCCCCAACCTACCATGTGAAGAGTTTGTTGTGCACACCAATCAGGAATGGAAAGAAGGATAAAGTTATAGGCGTTTGCCAGTTGGTCAACAAGATGGATGAATCTACGGGTGAGGTGAAGGCCTTTAATCGGAACGATGAGCAGTTTCTGGAGGCCTTTGCCATCTTTTGCGGGCTTGGCATCcagaacactcagatgtacgaGACTGTGGAGAGGGCCATGGCCAAGCAGGAAGTCACCCTTGAGGTTCTCTCTTATCATGCCTCCGCTGGGGAGGAGGAGACGCGGGCGCTCGAGGTAACTGCGgcAGCCACTATTCCCTCAGCTCAGTCTCTGAGGCTACTAGAGTTCAgcttcagtgactttgacctgTCTGACGCTGAGACCACCCAGGCCACTATCCGCATGTTTGTGGACCTCAAGCTTGTGCAGAACTTTCAGATGAAGTACAAGagCTTGTGTCAATGGATCCTGAGTGTGAAGAAGAACTACAGAAAGAATGTGGCCTACCATAACTGGCGGCATGCCTTCAACACGTCTCAGTGCATGTTTGCCATACTCAAATCTGGGAGGTTACAGAACAATCTAAGTGATTTGGAGATACTGGCCCTGATGATTGCGACTCTGTGTCATGATTTGGACCATAGAGGTGTCAACAACTCATATATCAAGAgGAGTGACCATCCTCTAGCTCAGCTCTACTGCCACTCCATTATGGAGCATCACCACTTCGACCAGTGCCTCATGATCCTCAACAGTCCAGGCAGTCAAATTCTAAGCAGTCTTTCACTGGATGAGTATAAAACTACGCTGAAGATGATTGAAAAAGCAATCTTGGCAACTGACCTGGCCCTCTACATGAAGAAACGAACAGAGTTCTTTGAACTAGCAAAGAACAACCAGTTTAATTGGGAGGATGATTGTCACAGAGACTTGCTAAGGTCCATGCTGATGACTGCATGTGATATCTCTGCCATTACCAAACCCTGGCCTGTACAAAAGAGGATAGCTGAGCTTGTTGCCACAGAATTCTTTGAGCAAGGGGACAAGGAAAGAGAAGAGCTGAACATTGAACCTATTGATCTGATGAACAGAGAGAAGCGTGATAAGATTCCCAGCATGCAAGTGTCTTTCATCGATGCCATTTGCACACAGCTGTATGAGACACTGGCCAGTATGTCAGATTTCTGCTCCCCCCTACTGGAAGGCTGCAGGAAGAACAGGCAGAATTGGAAGCTGCTTGCCGAACAGGCTGAGGAGGCGAGATTACTGAATGGAGGACTTTAAAAGGCTCATCCCAGTCAGCACAAGATAAAGTTTACCCCTTTCCCTTACCCCCAGGTCCTTCTTCATACCACATACCACACACTGAAGCTTTAAGCTACAAATTATTTCCAGTCATGCTATGAAGAGTTCACCAACCACTATGGAGTGAAATGTAATTTTACCTTTGGGATGTAGCTGAATCATATTGGTTCCATGTAGCTTGGGGGGTGAGGGAACACAACACTAAAGCAATATGGTCTATAGTACACACATATTCTGAGTCACCTATGTGTGtttgttacttaaaaaaaaatcacacaagcTCTTGTTTCCTGTAAAGAAGAGGAGTGATAACAGTTACGCTTTATGTTTGTATCAGCTTTGGAAGTTAATAGTTTCTGCCAGTCTACTCACTGAAACTCATGCTTTCAGGAATGAGTCTAATTGGGCATTTAACAGCGAATGCTTCACTGATTGGATAGGTGTGAGTAAAATAGCTATTACTTGCTTGGACCTTTTCAGGTAATCTTAGAGTAAGGGGGGctggtggggggaaaaaagattaTAATCTTTTTATAGTCACGCCAAACCCTGCATAGCGTCTATGCGAGGACATTTAtacaaagttttatttattgttttagtcCCATGTCAGGGTTTTCTGTAGCTCACTCACTGAAATGAAGAAGCAGAggcataaaagaaaataatttattcatcacTACCGTGCACCGTACAATTAAGCTAATATACTCAGCTTCAATggaacacacccacttcagatATGTAGaagaatgtcatttttttcccacattgtGTTACTGTTTTCACCTgtcttttgtatatttattaactttatatCATGTTGTGAGAACTTGGTTACTTATGTGTAACTCTTGCATAAAAGTaaggaaggaaaaaatatatatttaattgttCA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80696 lncRNA upstream 169327 20692263 ~ 20693111 (+) True G68070
TU80695 lncRNA upstream 169385 20692263 ~ 20693053 (+) False G68070
TU80678 lncRNA upstream 226873 20635348 ~ 20635565 (+) True G68054
TU80554 lncRNA upstream 380683 20480600 ~ 20481755 (+) True G67958
TU80393 lncRNA upstream 586763 20250058 ~ 20275675 (+) True G67827
TU80969 lncRNA downstream 295000 21188531 ~ 21189134 (+) True G68299
TU80981 lncRNA downstream 312214 21205745 ~ 21209324 (+) True G68304
TU80993 lncRNA downstream 340494 21234025 ~ 21234258 (+) True G68313
TU81190 lncRNA downstream 422724 21316255 ~ 21316515 (+) True G68435
TU81189 lncRNA downstream 427614 21321145 ~ 21321406 (+) False plag1
XM_026937340.2 mRNA upstream 15460 20843344 ~ 20846978 (+) True LOC113540687
XM_026937256.2 mRNA upstream 123264 20735827 ~ 20739174 (+) True cd248a
XM_026937147.2 mRNA upstream 170216 20682708 ~ 20692222 (+) True rce1a
XM_026937148.2 mRNA upstream 174673 20682708 ~ 20687765 (+) False rce1a
XM_026936344.2 mRNA upstream 201883 20652575 ~ 20660555 (+) True rab1ba
XM_026936124.2 mRNA downstream 18119 20911650 ~ 20926058 (+) True arsj
XM_026937309.2 mRNA downstream 42154 20935685 ~ 21012256 (+) True camk2d1
XM_026937311.2 mRNA downstream 42154 20935685 ~ 21012256 (+) False camk2d1
XM_026937308.2 mRNA downstream 42154 20935685 ~ 21012256 (+) False camk2d1
XM_026937310.2 mRNA downstream 42154 20935685 ~ 21012256 (+) False camk2d1
trnaa-cgc other upstream 509953 20352414 ~ 20352485 (+) True trnaa-cgc
TU80337 other upstream 707667 20147795 ~ 20154771 (+) False fcer1g
trnar-ucu_2 other upstream 761340 20101025 ~ 20101098 (+) True trnar-ucu_2
trnah-gug_5 other upstream 1033548 19828819 ~ 19828890 (+) True trnah-gug_5
trnah-gug_4 other upstream 1034056 19828311 ~ 19828382 (+) True trnah-gug_4
TU80896 other downstream 126727 21020258 ~ 21033753 (+) True G68232
XR_003404073.2 other downstream 433815 21327346 ~ 21327420 (+) True LOC113540699
XR_004577949.1 other downstream 735545 21629076 ~ 21639890 (+) True mettl4
XR_004577950.1 other downstream 735545 21629076 ~ 21639890 (+) False mettl4
XR_004578015.1 other downstream 858885 21752416 ~ 21762301 (+) False LOC113540377

Expression Profile