RNA id: XM_026936150.2


Basic Information

Item Value
RNA id XM_026936150.2
length 1687
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC113539992
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21787190 ~ 21793201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGTTCAGGGAGCAGAATTAAGTTTGCCATTTGTGAAGTACTGCAGTTTGCCGCCTTCTGTGTTCCATTTTTCATTGTGATGCAGCGCTTTGCCTTCATCCTAGCACAAGCGAAGCAGATGCAGCCCTCTGGTGGAAACGCTAGCATGGCTTACTGGTTGATCGTGTCTTCATCTGTTGCCTATCTGACAACCGTGGCACTTCTGGTGTGGCTGCCAATTAAGTACATGGTGTTCATGAAGAAGAAAGCCCTGGTGGGGAGAAAGAAgtggAGACCTGTTGCTCTGGCTTATGTGCTCCTCTCCACGCTACCCACTTTTGCATTCCTAATAGCCAGTTCTGAGGTGCAGATTAGAAATGATATGCAATTTGATACATTCACTGAGTTACCTGAGTCACTGGTTGTATTTTCCCTCATCCTCATTGACATTGTGGAAAGAATCCGTCACTGCAGACTTACTGGCCGGgcTAATGAATTACATCGAAATGCAGACATCCCAACCCTTAACCACACTGAGATGATGATGCCAATAGCCATTGCTGCCACTGGGCCATCTCCTGCAGCAGCAAGTACTGGTGTGGGGCCACAGAATGGAGCAAGAGCAGCTAATGGGCCCACTACAAGGTTACCTGGAAGAACTGTAGTTACAGGGTTATCAGGCAATGGGATGGTCACTGGGTTGCCCACCAGTGGGGCAATTACAGGGATTCCAGGCAACATGATAGGTTCAGGTGTGCCCAGCAATGGTGCGGTGCCATTACTGTCAGGCAATAACCAGAGGCAACCATATACTATATCTGGGATTTGTCCAGGCACTGGCCTGCCCTTAAGAAATTTCCAATATGCCACTGCATACACAGGACCATTTCGTTTTTTGCTAGCAAGTGATGTGCGTGCTGAAGCTTTTGCTGATAGCTTCCTGTTCTGGTTGGACACAGCTGAAATGGTGCGAGTTGCAAATCACACTTCTGTCTATTTCTCAGGTTGGGCTTTACCAGTGTACCTCTTCAGCTTTCTTTCAATGCTGCGATTGGCTCTAATGCCCCACAATCCCGTTCTCTCACCCCTGGGGGTGGCCCTACAGGACCTCCCCTTCCTCATTTTGAGAGTGGCCCTTCTAGCcatttttggatttgtcactcCAGTACTGTTTGTGATGAAGAACTTCTTGGTGTGTTTGGCTTACATTTACTTTAACTTCATGACCAAGCTTAAAGTTTTCAACACTGAGAGGATGTTCTGACTGGCCCAGTGAGAAAGTTACAGTGAACTGAACAGCAGAGGAAAACAAAATTATGACTGTTACAGTCAATCTGAACTGCAGTAAGgctggatttgaaatgaatctgTTTTCAAATCCCAAAATTATTAGATACAATAATGTTGAGTATTTTCTtattacagaaaaacataaaggtccttaataataattttacttaCTAACCTAATGAAtgatttaatgtattattataaagaATTGACAGTGCCATAAGACCTGTGTTAATAAGAGAGATAAGAATTGAAACCTCACCTGCTGCACTTTGACCAATGTTTGTTTCAAGtgattttagttatttttatttcatgttactTTATCTCAATTGTCATGTAGATtaaatgtgtatacacacatagaTGCCTTAAATCACCTGTTCtcttttctggaaaaaaaaagtgcttatgAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81415 lncRNA upstream 24908 21754108 ~ 21762282 (+) False LOC113540377
TU81416 lncRNA upstream 24961 21754108 ~ 21762229 (+) False LOC113540377
TU81417 lncRNA upstream 37871 21732946 ~ 21749319 (+) True G68621
TU81294 lncRNA upstream 299702 21486974 ~ 21487488 (+) True G68523
TU81189 lncRNA upstream 465784 21321145 ~ 21321406 (+) False plag1
TU81502 lncRNA downstream 121605 21914806 ~ 21917776 (+) True G68687
TU81775 lncRNA downstream 451387 22244588 ~ 22244825 (+) True G68947
TU81789 lncRNA downstream 589893 22383094 ~ 22387745 (+) True G68955
TU81788 lncRNA downstream 599638 22392839 ~ 22397101 (+) True G68954
TU81842 lncRNA downstream 734127 22527328 ~ 22527556 (+) True G68999
XM_026936530.2 mRNA upstream 10369 21767052 ~ 21776821 (+) True LOC113540212
XM_034303777.1 mRNA upstream 24889 21754080 ~ 21762301 (+) False LOC113540377
XM_026936822.2 mRNA upstream 38477 21741189 ~ 21748713 (+) True enosf1
XM_026935991.2 mRNA upstream 147033 21629077 ~ 21640157 (+) False mettl4
XM_034303841.1 mRNA upstream 235380 21536003 ~ 21551810 (+) True LOC113540483
XM_026936379.2 mRNA downstream 14523 21807724 ~ 21828839 (+) True mrc1a
XM_026936380.2 mRNA downstream 14524 21807725 ~ 21828838 (+) False mrc1a
XM_026936381.2 mRNA downstream 35823 21829024 ~ 21843884 (+) True LOC113540130
XM_034303784.1 mRNA downstream 35823 21829024 ~ 21843884 (+) False LOC113540130
XM_026936359.2 mRNA downstream 56440 21849641 ~ 21914232 (+) False cacnb2a
XR_004578015.1 other upstream 24889 21752416 ~ 21762301 (+) False LOC113540377
TU82445 other downstream 1525303 23318504 ~ 23320343 (+) True G69509
TU83028 other downstream 2315594 24108795 ~ 24109889 (+) True G69971
XR_003403979.2 other downstream 3065825 24859026 ~ 24871263 (+) False kif2c
XR_003404013.2 other downstream 3914626 25707827 ~ 25881109 (+) False tnr
TU84209 other downstream 4104934 25898135 ~ 25901843 (+) False LOC113539772

Expression Profile