RNA id: XM_034303356.1


Basic Information

Item Value
RNA id XM_034303356.1
length 3645
RNA type mRNA
GC content 0.45
exon number 10
gene id m1ap
representative False

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13973996 ~ 14016125 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAAGTATGCCGATCTACACATGTGCTTTTCCTCTCCCACCGTTTTTGAGAATTTCCCAGGAGATTCAAGATGCTGCTGTTGGCTATAGAATTCAGAAGCATGAGTGAAAGAAACCGGTCAGGTGCTTCGGCCAGCCAGGTGTGCCGTGCATCGTCCTTCTCCAATCAGCCACCCCGCGTGCTGATAGTTGACACATCGCCACCTTGGTGGTCAGAGACACGTTCCGTCTTGTGTGAGGCTCTAGAGAACTTCCTCTCTCTGGCAAGCAGTCTGGAGGGACCCAGTCGAGTACCGCTGCTCAGCCTCTATGCAGTAAACCTGCAGCAGGAGTGTCTGCTGCCATTTGTGCAGGTGAAGGGGAATCTTGTGCGTTTACACTCATGTGTGGAGGAGCTGCGCTCTCTTCCTACAGAGGGCTGTATACGGCCACAGGTCGAGCTTCTTAAACAGGCAGTGCTGGACAGCCTGCAGCAGTACAAACACTACATCCGCCATGCCAATCTGGGGAACAACCTCCACAGTGGCTCTGTAGAGGTGACAGTACTGAGCAGTGAGCCGGGCCGGGCTGTACTCAGGCAGCTGGAACAGGGCCTGAAGGACTCCGACCTGGTCAGTCTGCGACGGCTGGCTGTCGTCCACATTGCCGTGGAACAGAACCTTCCAGACAGAGAGCCAGCTTGGAGTCCAGAGTCCTGCTCTACAGAAGACATGGAGCAGCCAGACGATGATCTGATGCTAGGGGCTGAGATGGACTTGCAGCTAGTGGAGAACAGTGTCATCGCTGTGGAGAACATTCTGAAGGCATGGCTTCATGATCAAACAGGAGAAAGAGAGCACCTTCAGCTGCTGTTACCTGCATCTGTACAGACAAACAGTCCAAAACGCACTGCTGCTCACAGACCTGATCCTGtgtgtataaagtgtgacATGCAAGAAAGGCTTGTGAGCCCAGCTCTTCTCCCCTGCACGTCTGACCTTGGAGCCAAAACTGAGAGCATACGGGACTTCCCTCCAGCAAGCAAGAGCCCATCCAATCAGAACTCAGGGCCGCAGCGACTCCGAGTCATCAAagctctGCGTGCAGAAGGAGTGTGTCAGTCTGTTCTGTACGGCCTTCCACTAGTCATCAGACCTACAACTTGCTGGCAGCTGGACTGGGAAGAGATGGAGAGCAACCATCAGACCTTCCACgctctctgtcacacactccGAACACGTGACTGGTTTCTCTTAGTGCGTTCAGAGCCTGAGTTTCGTTCCGCATCCAGCGCGTTTTCCTACTACGTGCTCCAGTCTTcagcctccctctctctcttactaAAACCTGTCCTCACACGAGAATTAATACTGCCCTGCGATCTGCCTATCTCAAACGAGGACCCACCACTCAACACACTCAAAATGGTAGAgaggTGTCTGGAGCAACTGGAGACGGATCCTGTGTTTAACCCTCTTTGTCTGGGCTGTAATCTCTACCCGTACCTGAGGATGAGAGGCCTGCTCTCTCGCTCCTACGGCTCTCGCTCTCAGAGCCAAGCACGAGGCCAACGGAGAGACACAAACCGAGCAGCAGAGGGCTCCACACCTCGGCAGTTGCAGCAAGGTCGTGTCAGAGCCATGGTTGCTCCTCTGTCCTCTGCACCCCCAGCCAAGATGGCCCGCCCCCCTCTGACCCTGAGCCGCTCACGACCCCATGACTCCTCCCTTTGCTTAGTGGACGATGATGTGGATAATGATCTTCTTATGATgttgtgagagtgagagtgttaCAGTACTAAGTTTGGTGTCTACTATTCTGTGCAGACTGTTCTCACATTGGTTGTGTTTCTGGTAAGTGTATGTTTAGACACATAAAACTGGCTTACGTTAGCGTAAACTGACACACCACACCTCAGTGCACTTCACACCAAATCTTATATTTATAGCCCAGAAACACTTCCAGTTCTAAAGTAAGCTGGGGATTTTTTAGTATGTGCAGAAATTAACTCTAAACAAATGGTATCAAGATATCTTCAGATATAAACAGACTAACTGACAGAAGTAGTTGAAGCCAAATTCTAAAACTAGATATTTGTTGTCATTCACTATTCAGCAATCGCCATCATTCAGTGGTTAGCATGCAAATATCTCTATGCCCTACGAGGGAAAATATACAGACATGTTAATAAGTTTAAATATCAAATAAGTACTGCAGACAAGACAGCCTATTAATAATTCAAAACGATTCCTAAACACCACAATTTGTAATGAGTCAGTGATTGGACAAGGTTTGTTCCACTCACTGGTCTTTATTAGCTATTAGAGGACAAGATGGCAGCCTTAcagtgcagcacacacaccagctgttTATGCGTCTACAGCTGTTAAACATTAGAGCAGATAAAATGCCTCATTCTTCGCAAAAAGACTGGGAAAAAACTTTAGACCCCGTTAACGCCCCTACTTTGGCCCTAAATGGTCAGAACgcataaaataaagcagttttgtTACTGAGATGCTGACAGTTGAAGTAGTTCTCACAGTGCTTAATTAGTATGACTTGACTTTCAGCATATAACGACCGGGCTATTTGCTTTAACAGCAAATgtaggaaattaaaaaaattgaagaaaaaaacataagtaAAGggtgaaataaatatgaagcaGGGTTTTCTAACTGTCTGTAGAGCTCTGAGGTGTAAGAGATATAGGAGAGCACGTGATATAGATGCATTGTGCTCTATCGTGCACTACAACATTCACACACCACCCAGCACGAGGCCACAATGAGTACTGTgctgaaaatgagagagaactGTGTTcagttcagagagagagagagagagagagagagagagagagagagagagagagagagagaggtctttTTATAATGCTATGTAGCATTATAGTTTTGAGGATACAAAAGGGAATTAAACACTTTCTGGAACTGAAGTGATGTCAAGGCCATGGCGTTACTCAATGTCACTGTCTGACTGAGGCCCATCAGAGCTGCTTCATTAACATTTCCGCTATTCCACCCACCCAATGCCGCCTACACCAATGTCACTATGACCTCATTTTGGGGTTAGACATTATGCAAAACCCATCAAAAATGAGAAGCATTTTGTAAAAAGTTCTTCGTCTCAGTTTCCAGTtccatatattattttaaaaaggctttaaacatttaaaaggaGGGATTTTCTGATTGTATTACTTGAAGGTTTTGCCCAGAGTGCTTTCACATCTGAATCTACCTAATGGCGTGAGCACGTGTTCTCTCCTGGGCCAGATTGCATGTGGATTTGTAATGTCTGTGAAGTGTTATTAAACTCCAAGTCGAAGTCCACAGCAACCTTTTTCCCCATAGAAGTAATTCTACAAATTTAACTAAAAAGTTTATAGAGATTGATACAATATGTCTGGGCATTTGTCCACAAACAACAGAGACGcaaatgtgttgtattttaagAGTCTGTTGCATTACAATAAAGAGCTTCCTTTCTCCTACCACTGCATTAAGGAAAGGAGGTCAGTGCATTAATGCATCTTTCTTGATAATAATTAATGTTcagtttaattgttttattttcattaattaacttattttcattcataaacTTTATCTTAATGTAACTTGTTTAATACCCATTATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU75876 lncRNA upstream 82468 13903441 ~ 13909459 (+) True G64049
TU75843 lncRNA upstream 232176 13755544 ~ 13759751 (+) True G64025
TU75783 lncRNA upstream 243855 13695649 ~ 13748072 (+) False G63973
TU75785 lncRNA upstream 243855 13695649 ~ 13748072 (+) True G63973
TU75791 lncRNA upstream 419094 13570002 ~ 13572833 (+) True G63976
TU75936 lncRNA downstream 1161 14017286 ~ 14017669 (+) True G64105
TU75926 lncRNA downstream 25843 14041968 ~ 14042414 (+) True G64095
TU76204 lncRNA downstream 40402 14056527 ~ 14056887 (+) True G64308
TU76367 lncRNA downstream 278877 14295002 ~ 14295261 (+) True G64459
TU76370 lncRNA downstream 280145 14296270 ~ 14296472 (+) True G64462
XM_026935809.2 mRNA upstream 93422 13891113 ~ 13898505 (+) True LOC113539767
XM_026935907.2 mRNA upstream 102343 13882312 ~ 13889584 (+) True ankrd46b
XM_026936440.2 mRNA upstream 111253 13798180 ~ 13880674 (+) False col4a6
XM_026936120.2 mRNA downstream 19082 14035207 ~ 14039607 (+) True nagk
XM_026936442.2 mRNA downstream 48369 14064494 ~ 14080036 (+) True hspa12b
XM_026937054.2 mRNA downstream 76369 14092494 ~ 14151289 (+) True slc8a4b
XM_034303973.1 mRNA downstream 213848 14229973 ~ 14253890 (+) True ppp1r14bb
XM_026936979.2 mRNA downstream 213857 14229982 ~ 14252612 (+) False ppp1r14bb
XR_004577999.1 other upstream 272473 13705576 ~ 13719454 (+) False gc2
XR_003404009.2 other upstream 429661 13558623 ~ 13562266 (+) True cited1
TU75730 other upstream 516890 13470769 ~ 13475037 (+) False LOC113539889
TU75687 other upstream 573231 13418377 ~ 13418696 (+) True G63903
TU74787 other upstream 1696804 12292514 ~ 12295123 (+) False si:dkey-112a7.4
XR_004578085.1 other downstream 239619 14255744 ~ 14269340 (+) False brms1
XR_004578093.1 other downstream 615905 14632030 ~ 14658936 (+) False zgc:194930
XR_003403994.2 other downstream 2007070 16023195 ~ 16039984 (+) False LOC113540079
XR_004578074.1 other downstream 2294088 16310213 ~ 16319166 (+) False LOC113539780
XR_003404046.2 other downstream 2351831 16367956 ~ 16370684 (+) False LOC113540582

Expression Profile