RNA id: XM_026936168.2


Basic Information

Item Value
RNA id XM_026936168.2
length 2141
RNA type mRNA
GC content 0.38
exon number 2
gene id sod3a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 18849165 ~ 18851580 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAATAAAGCAATGTATCACGTCAGTGTGTTCCTGACCAGCAGTGGGGTAGAAAGTCCAAGATTCCACATTTCGTCTGACGACTCTGTTGGAATAAGAACTTACAGAAATGATGAAGCTAATCCACAAGGGAAATAATATGTTACCACTGCTTCTGACCTGGGTGATACTTGTGCACACTGGAGAAGGGATTGCATTTAATCATAGCAAAATGTCTGTTGTTGAAGCTCCTATTGAGGTTACCCTCTTCAATGGAACTCTGTTTGCCACCTGTGAACTCAAACCTGACCCCAATCTTCCCACTGGCCAACCTGAAATATATGGACAGGTTCTCTTCAAACAAACCTTCCCAGCAGGCATACTGCAAGTGCTGATCAATGTTCATGGCCTGCCCACTGATGACCAACAGAAACGAGCTATTCACGTCCATCAGTTTGGAGACCTGAGCCAAGGATGCATCACTGCTGGTCCACACTATAATCCCCTGGGAGTGGACCATCCCACACACCCTGGTGATTTTGGCAACTATGTGGCCATCAATGGAGCTATAAGGCAACATCTAAACATGGAAAGGGGCACCCTATTTGGAGGTCATTCGATTTTGGGACGCGCTGTTGTGATCCATGAGAAGGAGGATGATTTAGGGTTAGGGCCAAATGAAGAGAGTAAACGAAGTGGGAATGCAGGAAGAAGGATTGCTGGATGTGTCATTGGCATCTCGCCTCCTAGCCTGTGGGAGAAACTCACCAAGGAGGTGGAAGAGGGGAAGAGTGATAACAGCAAGGCAGAAAATGAAACATAGGAGAGGAAGTGTGAGAGATGGATGAAGGAGACAAATTAGGAGAAGGCATACTACATACTTTTCTGTTTTGAGCATAATGAATACATTCTAATGGTATTTTGCAAACACAGAGATCACTATCATGGAGAAGTCATGATAATCTTTATATCTTTTGACTAATGTGAATCATTTGaccatacataaaaaaaaaaaaacagatcaggaTTTTGGGAAGAGATGATGCCTGAGTATTTCTCcaaaagtgtttaaatgttgATATGACTGTATAAGCCCATTATATAAGAGAGGCTTGCACGCTCAGTAATCCAACTTTGACACATTTTCAGCACAGACATTTCAAAGCATAGCACTTAAAGAATTTCACATCTAattcataatacataataaacaaaaagacaCATTTATAACCAAATAGATACCAACTATCAGTCTTTTCCTTGCTGGTTGTTATAGTAAATATCCCAAAActcatacataaaaatattatgtttcaATTCATGAGGTTACTACGATAGTGgacatattttgtaatattaagTAGTAcatttgtgaatttgtgaacGACACAAGGagtttaacaggagtgtgtaagCTATCTAAGAAAATATTAGGTGAAAGTGTGAGCCTGTATGAACGATAAGCCTACAGCAGAGGCCCATGAGATTTATGATGTATCCAGCAACCATGAACCCATACACCACCTCAGTTCtcagtttagaaaaaaatcaaatggaCAATAAATTAAGGCATAAAACTCAATGTTCTGAGTGCTTCTTCATATGGTCTCTTTGGGAACATTTTCCATGTGGGCAGCACAACAACAATACCTGGATCCGATAAATAAGTTAAGGAAGAATGTGAGAAGTCAACATCAATTTTGTGTGTGGCCAGGGTCAAGCTGACTGGACTGGAGTGATCTGCCAATTTGTTCAGTCAAGTAACTTCATTATTTAAACAGTAAAAGTCATGACTGAAACACTTGATTATGGCATattgtaaatttatacaatgcATTTAGCTGTATTTCAGACATTCAGACACTACTAGTCAACAGTTTGGACAGACTAGATTGAGTGTATGCTTTTCGCTGTCTTAAAGGCAATTTGGTAAAGACTCGTTtctaaaacaaatgtaaataattaagtaaatctatattaaatttatttaggaatcaaattgtatttttaaaaagttttatggAACTTAGGAGAAGCAGTCAACAAGTGTCTGCTTATTTGGAAATGTTCCTCATGAGGTCGTTGAGAAGatgccaagagtgtgcaaagcttcatcaggaatactgttatgaatttgaaaaataaaagttttgatatgtttaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0019430 removal of superoxide radicals biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004784 superoxide dismutase activity molecular_function
GO:0005507 copper ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K16627 SOD3; superoxide dismutase, Cu-Zn family

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79242 lncRNA upstream 15338 18828179 ~ 18833827 (+) True G66855
TU79140 lncRNA upstream 179915 18669042 ~ 18669250 (+) True G66754
TU79045 lncRNA upstream 357584 18491372 ~ 18491581 (+) True G66670
TU79026 lncRNA upstream 418029 18430562 ~ 18431136 (+) True G66654
TU79006 lncRNA upstream 467003 18381956 ~ 18382162 (+) True G66637
TU79254 lncRNA downstream 7462 18859042 ~ 18862711 (+) False G66865
TU79255 lncRNA downstream 7624 18859204 ~ 18863417 (+) True G66865
TU79288 lncRNA downstream 58066 18909646 ~ 18910488 (+) True G66888
TU79287 lncRNA downstream 59477 18911057 ~ 18911397 (+) True G66887
XR_003404012.2 lncRNA downstream 269258 19120838 ~ 19122020 (+) False LOC113540244
XM_026936118.2 mRNA upstream 418806 18426358 ~ 18430359 (+) True gba3
XM_034304071.1 mRNA upstream 605368 18221624 ~ 18243797 (+) True sec24d
XM_034303317.1 mRNA upstream 705534 18113433 ~ 18143631 (+) False frem1a
XM_026935846.2 mRNA upstream 705534 18113444 ~ 18143631 (+) True frem1a
XM_034303316.1 mRNA upstream 705534 18113473 ~ 18143631 (+) False frem1a
XM_034303649.1 mRNA downstream 99467 18951047 ~ 18954000 (+) True ppp1r15a
XM_034303737.1 mRNA downstream 319119 19170699 ~ 19327377 (+) False LOC113540597
XM_026937175.2 mRNA downstream 319119 19170699 ~ 19327377 (+) True LOC113540597
XM_026937171.2 mRNA downstream 319119 19170699 ~ 19327377 (+) False LOC113540597
XM_034303739.1 mRNA downstream 319119 19170699 ~ 19327377 (+) False LOC113540597
TU78855 other upstream 640601 18197312 ~ 18208564 (+) True G66492
XR_004577948.1 other upstream 718660 18113444 ~ 18130505 (+) False frem1a
XR_003403977.2 other upstream 838203 18000158 ~ 18010962 (+) False ctdnep1b
trnat-agu other upstream 1084631 17764461 ~ 17764534 (+) True trnat-agu
TU78354 other upstream 1229086 17609704 ~ 17620079 (+) True LOC113539940
TU79253 other downstream 4876 18856456 ~ 18858652 (+) True G66864
trnah-gug_4 other downstream 976731 19828311 ~ 19828382 (+) True trnah-gug_4
trnah-gug_5 other downstream 977239 19828819 ~ 19828890 (+) True trnah-gug_5
trnar-ucu_2 other downstream 1249445 20101025 ~ 20101098 (+) True trnar-ucu_2
TU80337 other downstream 1296215 20147795 ~ 20154771 (+) False fcer1g

Expression Profile