RNA id: XM_026936180.2


Basic Information

Item Value
RNA id XM_026936180.2
length 3585
RNA type mRNA
GC content 0.44
exon number 1
gene id chst2a
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29333119 ~ 29336703 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCAGCTCGTGTGGAGTAGTAAACAGGAGCCTGGGAGAGGAGTCGCTTCTGCTGCTCGCCGCATCAAATCCAGCTCGTTATCCATCCCAGAAACGTTCACAGTGTTTTCAGGAGTGTGATATTTTCAGTGGGACTTAAAATGCGCGGATATGTCGTTATTTTAACCACGGGTTTGCTTTTATTAACCTAGTACTGCAACGTGAGGTTAAAAAAAGCTCAGGGATGCTGCATGGTAAGCAGAGGCTGCAGCATTGACTTGGCTTTATCTTTATAAGTACTAAATGTAATTAGGTTTGTAATTAGTCTGTATCCAGACAAGTCCAGCTTCTCGGTTGGAGAGTTCCCCTGGAGAACTACAGCTTAATCGATGTTGATCGAATGGGCCCAGTTAGgactcatcctcatcttcatcttcatcctcaacCTCGTCAACGCACAGCCACGACGCTCCTGCCTCCGCTAATATCGAACCGTAATATCATCCCGTcctaaatgaaaaataagccATTCCTTGTTAAACCATCATGGGAGAAAGCGTTCGGAAAGAAACCCAGAACGTACTGCAAAAGCCACACCAGGATCATCGCCAACCCTGGCCTGGTCATCAAAGTGCTGCGTCGGAAGAAGATTGTCGTGTTTCTTGCCTACTTTATACTTGTGGCGCTGACCATGCTGAACCTGGCTAACTACAAATGGGCCAAAGAGTCTCAGCCGTGCAGCCTCCAGGTGAGCGATAACGTGAACTTCCAGAACAGACCAAACTTTCACTTCCTTTACAAGACCCCTCAGGTGAGAAAGCGGCAACTCGTCTACGTGTTAACCACATGGCGCTCGGGCTCGTCCTTCTTCGGCGAACTTTTTAACCAAAACCCTGGAGTGTTCTTTTTGTACGAACCATTGTGGCACATTTGGCAGAAACTCTACCCTGGAGATGCATTGTCACTCCAAGGAGCAGAGAGGGACATGCTTAGTGCTCTGTACAGGTGTGATTTCTCAGTTTTTCAGTTGTACAACACTCAAGCTGGGAAGAATATAACCACTCTAGATGTCTTTGGTGCCCCACTTAATAAAGTCATCTGCTCCTATCCCCTTTGCTCATTCTATAGAAAGGATGTGGTGGGAATGGTGGACGAAAAAGTGTGTAAGAAGTGTCCACGTCAGAGCCTTCCAGCATTGGAGGAGCAGTGCCGAAAATATGACACCGTCGTGATTAAAGGAGTACGCGTTTTGGACATAAATGTCTTGGCTCCTTTGATAGAGGACCCCTCGCTCAATCTGAAAGTGGTCCACTTGGTGCGGGACCCACGAGCCATGGCCAACTCCAGAATTAGATCCAAGCATGGCCTGATTCGGGAGAACCTGCAAGTGATGCGGAGCAGGAACCCAAAGATGCGGCGTGTGCCGATGGTTGACCCGAACCATAAAGCTGGCAGGAAGGATGTTTCAGACTACCACGCCATCGGAGCCATGGAGGTGATTTGCGAGCACATGTCCAAGACTCTGAAAACGGCACTCAGCAATCCTAGCTGGCTCAAAGGGAAGTACATTATGGTGCGATACGAGGACTTGGTGGAAAACCCAGTCAGGACCTTAAAGCGTGTTTACCACTTTGTAAACCTGACAGCCAGTCGCGACATGGAAGCTTTTGTCGTGAACATGACTAGTGGCCACAGTAACTCTGCCAAACCTTTTCAAGTTTCGTCCAGGAATGCGACCGTTGCCGCTAGCACGTGGAGAACTGTGCTCACCCTCCAACAGATTCGGCAGGTGGAGGACTACTGCCGTCATGCCATGTCTATTCTTGGATATGTACGTGTTCGCACGTTGTGGGAGGTGAAGGACCTGAGCAGGAGTTTATTAACTTTACCCAAGCTCTGAAACTCTGTGGTGACCAAAGAAAATGCAATTGCATCATGGCTTACACTAATTCGAGATACATTGGTACATTGGAAGACATCGGAAATGCATTGTGAGTTTGCACTTCGAATTGAGTGTGGTAGACTTTTTGATATGGTGTGAATGTTTGGATACTAGGACTGGAACCATTTGACCACAACTgaccaaaaagacaaaaaatacctTGTATTTGGTGTCTGATTTACCATTTAAGCTGTGCCAAGATGTAAACTCAGAAAACTGAGATTGCTTTATAACAAGCACAGCTTTGGAGCTTTCTTCTTTTCCGTAGACAATCTTTCTTTCTATTGGAACAGAAAGCTTCTGATACATTTCACAGTAATGTGTGGGTGATGCCCCAAGACTTTTGGGCTTCACACACACGTCTGAAGGAGTGGAAATGTACTGAATTGTGGGAAATTCACCATATTGACTCTATGCTTtctgatataaatatttaacgATGCAGGGTATATTTTTTAGGAATGTTTCAGACTACTATTCTACTGGAGCTTTGGGGTTTCTGGTCACAGCAATTAATGTGAACTTATTTCTGGTTATGgtttgaaataatgagaaacttaatgagatgaagtgccttgtttggaaaaaaaaaacaatgaaagccatgaaaaaaaaccctcacaattctctttctttcctcatcATACACTTTCACCCCAAAATCTGGTTATGGATGCATCTAATCAAGGTTTTTCTGCGTTTGCATTGACGAAAACAAGAAAGCTGTATATCCTTTTCTTTAAACCCCTTCATCTTGATTATATACTCGAGTACAGGTCATGTGGTGTTTAAAAATAGCAAGTGATGCTGCTGAAACGAGATCATTTTAACAAACTGTTTCCTGCTTGTATCACAAAAATCCCTCTTAATGTAGTCCttcatcccaaaaaaaaaatctgactctAGTAACTGAAGAAAGTAAGGAGATTAGGTTTGCTCCTCAGGGACGCCCTGGCTTCAGAGTCTTGCAGGATTCACAAAAGTAGTGAAGTATGTCACGGAAATAGTACGAATAGCAGCAGCGCTAAATAGGGACACAGTATTCAGGGAGGATGTTAAGTGGACACAGAGGGACCTCAGATGGGGACCTGATGGCTCTCAGAGCGAAGCCTTGGCAACTGCTCTGGCTTCCTGCCATCTCTTCTCTTCCACTCcactgtttatctctctctctctctcagtctctctatTATAAATCAGAGGAAGAGTGTGAGAGTTTAAAATGACATCTGGctaattaattatttctttttttatcatggATTTGTCAAAAGAGAGACAAGAGCCCAGCTTGTTTAgtttttctgggaaaaaaaacataacagccTCCGATTCGAGGTCTCAGTCCTCAGCGCTACGCTCAATCACATTTGCATTTGCtcttttacattatgtttaGCTAAGCAAACGTTTACATGCTGAATGATGACCTGTTTTAATGTGTGCGGGAATGAGGCAACATAGTGTACcgatgttctgtgtgtgttttattttggggCGAATACAATAATTATAATCAAAGTCCGTAATTCGGAAAAGGAGGAAACAGGCGAAGGGCAAAGCCAGGAAGTACCCTGAGACACAGCACTTTGAAAACAAGGCTTGGAcaattacaataacaataatacacaaaaGTAACCAGAAACAGCAGGATAGGACTAGAC

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86901 lncRNA downstream 12785 29273589 ~ 29320334 (-) True G73327
TU86893 lncRNA downstream 114961 29216270 ~ 29218158 (-) True G73319
TU86892 lncRNA downstream 118068 29213553 ~ 29215051 (-) True G73318
TU86818 lncRNA downstream 136952 29128055 ~ 29196167 (-) True G73247
TU87006 lncRNA upstream 203392 29540095 ~ 29540356 (-) True G73423
TU87022 lncRNA upstream 270898 29607601 ~ 29607805 (-) True G73439
TU87036 lncRNA upstream 334484 29671187 ~ 29674270 (-) True G73452
TU87041 lncRNA upstream 374383 29711086 ~ 29712194 (-) True G73457
TU87042 lncRNA upstream 376190 29712893 ~ 29713446 (-) True G73458
XM_034304142.1 mRNA downstream 10202 29300306 ~ 29322917 (-) False dipk2aa
XM_034304140.1 mRNA downstream 10202 29300306 ~ 29322917 (-) False dipk2aa
XM_034304141.1 mRNA downstream 10202 29300306 ~ 29322917 (-) True dipk2aa
XM_034303995.1 mRNA downstream 161198 29150521 ~ 29171921 (-) True usp33
XM_026936482.2 mRNA downstream 185627 29131186 ~ 29147492 (-) False zzz3
XM_034303445.1 mRNA upstream 22797 29359500 ~ 29371526 (-) True pcolce2a
XM_026936950.2 mRNA upstream 22797 29359500 ~ 29371522 (-) False pcolce2a
XM_026937224.2 mRNA upstream 105412 29442115 ~ 29452793 (-) True mfsd8l2
XM_034303512.1 mRNA upstream 124338 29461041 ~ 29466020 (-) True kcnmb2
XM_026937229.2 mRNA upstream 124338 29461041 ~ 29464798 (-) False kcnmb2
TU86878 other downstream 180738 29148638 ~ 29152381 (-) False usp33
XR_004577982.1 other downstream 448154 28873580 ~ 28884965 (-) False LOC117597037
XR_004577983.1 other downstream 448154 28882327 ~ 28884965 (-) False LOC117597037
XR_004577984.1 other downstream 450955 28873578 ~ 28882164 (-) True LOC117597037
XR_004578096.1 other downstream 680694 28648324 ~ 28652425 (-) False LOC113540437
XR_003404076.1 other upstream 186691 29523394 ~ 29523466 (-) True LOC113540702
XR_003404072.2 other upstream 187020 29523723 ~ 29523912 (-) True LOC113540698
XR_003404071.2 other upstream 187806 29524509 ~ 29524687 (-) True LOC113540697
XR_003404077.1 other upstream 188286 29524989 ~ 29525061 (-) True LOC113540703
XR_003404065.2 other upstream 227899 29564602 ~ 29575727 (-) False LOC113540665

Expression Profile