RNA id: XM_026936200.2


Basic Information

Item Value
RNA id XM_026936200.2
length 4643
RNA type mRNA
GC content 0.41
exon number 2
gene id gpr185b
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11818766 ~ 11824148 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGAGGAGCGGCTGCTGCGCCTCTGCCCAGGTTTCCGCCTGACAAGTTGCACGATTGCACTCGATTACCCAGAACAGTATGGAATGATCAGGATAAGGACCTGATGATTTTCTTTTCCCCCCAGctctcctctgtcctgtgtCCTCTACCTCCGTCTGTGTGTCGTGTGAGGAGCGCGGGCTGAGAGGGAAACACTGCAGCTTCATGGCACTAAGctaTGATTCACTCTCTTGCAGCAGCAATGAGCAACCAACTTCAAAACACCTCCTCTCTGAACACAGTCGGCGTGTGGAATTTCCAGGACGCACGCAACTCGTCACCTGTGCACACTGCAGACCTGCAGCCGCTTACCGTTAGCCCTTGGGACATTGCGCTGTGTGTGACTGGGACACTCATTTCCTGCGAGAATGCGATTGTGATCGCCATCCTGTTCTACACGCCCACCTTGCGGGCGCCCATGTTCGTCCTGATAGGGAGCCTCGCTTTGGCGGACCTGCTTGCAGGCCTCGGCTTGATTCTAAACTTTATCTTCATCTACATGTTCAACACAGAGTTTGTGACGCTGGTGTCAGTCGGGCTGCTCATTGCTGCGTTCTCTGCCTCTGTACTCAACATCCTGGCTATCACCGTGGACCGCTACCTGTCTCTGTACAACGCACTGACCTACAACACGGAACGCACAGTGACTTTCACCTACGTGATGGTGGTGTTCATCTGGCTGGTGTGCATCACGCTTGGTCTGCTGCCTGTGCTCGGTTGGAACTGTCTCCAGGATGAGGCTCACTGCAGCATTTGTCGCCCGGTCACCAAGAACAATGCCGTGGTCCTTGCAGTGACTTTCCTGCTCGTGTTCGCGCTCATGATGCAGCTGTACCTGCAGATCTGTAAGATTGCCTTCCGTCATGCGCAGCAGATTGCCGTGCAGCACCAGTTCATGGCTATTTCCACCACTAAAGGGGTCTCTACACTTTCTGCCATTCTGTGCACTTTCGCCgcatgctggatgcccttcgcCATGTATTCAATTGTGGCAGATTCTAGCTACCCAATGATCTACACATATGCCACAGTACTGCCAGCGACATGTAACTCGGTCATAAACCCAATCATTTACGCCTTCAGAAACCCAGACATTCAGAAATCCCTGTGGCTAGCCTGCTGCGGATGTGTCCCAGCCAATTTCTCCCAACGGCCAAGGACATCAAGTGACGTATAGGTCAGATAACATATGATTATATGAGCTTTCACTTTCATAGTTGGTGATGGAATTTGTCCACCCCCCCCAACAaccaccaaaacaaaaaaaaagaacaagaaaaacacagaaaacaaaaagtaCATATTTGATCATGCTATATGGTTACTGAGGTAAAATATCTCAAAGCTCTTTACTACTTGTGGGGATCAGTGTCTACTGTAGTATAAAGCAATGTTTTTGGTGCGGTGAATTTCATCATATCTAGCCAACAGGCAACAAATGTGCACAATACTAATAGAAAAGCAGAATAGCTAAGGTTCAATGAAAAGACAAATCCTTTGTATCGTAAATCAAAGGCCTAAATTCTGGCAacctaaacatacacacacctagCCATATATATCAATCAAAAATGGTGCAAAGGAAATTAGTCTGCTTCTGAATGTCTTTCTTTATTAGTTGACATCAGAGCTGGTCACTGTGCCTTCAAATGGCCTTCATATATAGAATAGCTTCATGGAGACATGAAAGGCTCTAGAAATGAAAGAAACTGGCATTTGACCAACTTTGCAACTGTCTTGacaaaaatttaatatttgCCTGTTAACCTTGGTTGTCGGTCTAGAATCCATGGAAATGTCTTGGTATGATATAGTATAAACATACTGCCATAGATGCAGTACATTTATGTGCACTGccttcagcaccatggacagcaGCCAGTGCACTGACCAGGCCATTCCTGAAGCCCCACGTTCCTTTATAACGTAGGAATGACgttaggaaaacaaaaaaagctcaCTGAGCAAAATCCACAGGCACTTTGCAATCTCTCTTTAGTCcagtttattttataactttattaGGGACAGATAAAGACAGGGCAGGTTGAGCTACATCCTCAAGGTTTCTCAGGATAGTTAATGGTTCTTTAAGTCCAACttacacttttacatttacactttacTCATtcggctgatgcttttatctaaAGTATCTTAAAATAAGgccaggatacaactgagcagttgagggttaagggtcttgctcaagaaCCCAACAATGGCAGCTCGGTAGTGCTGGGATTGGAACTCACAACCAGCCGATCAGTAGCCcgaagccttaaccactgagccatgaTGTCCCTGATGTAGAACCCTGTCTGAAAAGGGAAAGTGTATGCTGCAGTGTTTTACATGACAGTCTGAGGAACACTTAAAGTTTCTAGACTTAATCTATTTTCCAAGAGTGCAGAGCATGatactgaataaaatgtttaactgCAAATTGGATAAACCCTAGTAGATACCGTCAGAGTAGAATTAATAAGCTACTTCATTCAGCTCAATATTATTTCTAGAATTGGAATTGAAAAGTGGTCTTAAATTAGATTAGACAAAACCATGCAAAGACCTTCTCTTGTTCCCCAGTCTAATCCAAACTGACACAAAAGTCACAAGTATTATAATGAACAAAGTTATTGGATTTCTGTTCAACTGTAAGAAGCTACACACACTAAAACCTGCCCTGTCTTTTTAACCTAAACATTTTATAGTAATTGGCTTCTGCTTATGAGTTTAAAATTATGCCTTGAATTTGACACCCAGATTACATTCTGCACTTACAGTGTAACACCAGACACCAGGTGTAGATCGTCAACAAATGAGACAACTTTCCTATGAAACCATGGAAACTCTGATATGcacaaaacatgaacataatgtagatataaatatattaatagcTTATATCCGTATCAGGTAACTGGGGCAGCAGGCACTGGACTGAATGTTCTTGAATTGAGGTTAATGAAAATGGACCATGTGCTGTCGTTCAAAACTGCGGCTGTGTCTTAAATCCACCCGTAATTGCATATGTAGTAGACTAACTGGAGATTCAGCCATTTAAAATGGTGtcccatgtaaaaaaaaaataaaaaatctaggGCGCTGGAACATTCGTCCCCTCAAGCGTCACATGCCCTTCAAAATATATGGGACTAACAGCTGCGCTAACCAATCCCAGATTACACtactgaaaataagaaaaaaaaaattaagatggTGGTGGAGTCACAAACCGTTCTAAGAGTCATTCatatgtataaattattaatagaACATACACATTTGTATTGTGCATTTTaacttttgatgtttttttttcaaatagtgATGTGTACACTTTGTTGTCAACCAATTGCATGGAAATAGGTGTAACAACATTTCATTCTGGAAAgactgggggggaaaaaagccgTAATCCTTTCCCTTGTCTAAAATGTATGATCTTGTTCTGGGccttatttcattattaactgCAATAATCTATCAATGTGCGCTGTCCATTGATAATGCTAATCTCAAGGAGGCCATCGACAGAGCTAATTCAACATAGAACTGACAATGAACAGAGCTCATTTAACCTTGAGCAGAGCTAATTTAACCTTGAACTGAACTTACCTAGAGCTAATTTAACCTTGAACTGAACTTACCTAGAGCTAATTTAACCTTGAACTGAACTTACCTAGAGCTAATTTAACCTTGAACTGAACTTACCTAGAGCTAATTTAACCTTGACACTTGAACACGCCAAATAGGTCAGAGAACAAGTTCTGCTCGTAAAATCAGAAAGTTTAGGGGTCTGAAGTTTGGTGGAggccctgaacacacacacacacacacacacacacacacacactgactaaccTCAGCCACATTAGTGACCTACACTTTATCTGATGGACTTTATTTTGGAGCTGTCCTACAGTCTGAACACTCAGAAAAGATGctccatttgatttttttttaaagtgtgtgtatgagagctAGAAAAAGAGCtaattgtgtgtttatatcactCACTTGTATCTTGAGAGGGCATCAGTGGCCAATCACGTGTGCCCGCTTCAAATCTTAATGTTTTGATGCCAGTCTGTATTGTTAGGTATCATATTTCCACAGAACTATACTCAATGGCACGCCATAGATTCCGTTTCTTCAGGGGCACTAGGGTTATTTTTCATATGCAATGCTGTATAGATACATTCTATTTTTATACACATCAGGGCATGTGTTTTACAACATGGtggtgtcaatgtgtgtgtgtgtgtgtatatgtatataatatccGTATTCTTGTAAGTGGTTTcttaaaaaacaagcaaaatgaGTGTTGCTGATGCAAAAAGTGCCATAATTTTAGTAGtgtcttacttacttacttattgaTTTCATGTTATTGTGAGAAAAGAAGACAAACAAGGATTATAATTTCTATCATCACCTCAGTTAGAGACTATGTAGAACTTAACATAATGGAGAAGCTTCACCAGTATTGtagtaatttgtaaatatacagtggggtccaaacgTCTGAAACCACATTGAAagtctgggatttttttttttatttaaaattggaaataaacagattttagacttt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU74260 lncRNA upstream 113504 11655467 ~ 11705262 (+) False si:ch211-200p22.4
TU74270 lncRNA upstream 143071 11675313 ~ 11675695 (+) True G62654
TU74256 lncRNA upstream 207709 11610836 ~ 11611057 (+) True G62640
TU74255 lncRNA upstream 209497 11608756 ~ 11609269 (+) True G62639
TU74121 lncRNA upstream 213536 11590726 ~ 11605230 (+) False LOC117596972
TU74587 lncRNA downstream 38485 11862633 ~ 11863683 (+) True G62932
TU74622 lncRNA downstream 88702 11912850 ~ 11913106 (+) True G62967
TU74638 lncRNA downstream 110681 11934829 ~ 11937759 (+) True G62983
TU74720 lncRNA downstream 179842 12003990 ~ 12004223 (+) True G63061
TU74814 lncRNA downstream 424515 12248663 ~ 12249788 (+) True G63137
XM_026935954.2 mRNA upstream 102027 11707459 ~ 11716739 (+) True zgc:92429
XM_034304104.1 mRNA upstream 113430 11644902 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304101.1 mRNA upstream 113430 11644903 ~ 11705336 (+) True si:ch211-200p22.4
XM_026935951.2 mRNA upstream 113430 11644903 ~ 11705336 (+) False si:ch211-200p22.4
XM_034304103.1 mRNA upstream 113430 11644903 ~ 11705336 (+) False si:ch211-200p22.4
XM_026935824.2 mRNA downstream 262031 12086179 ~ 12093053 (+) True si:dkey-171c9.3
XM_026936836.2 mRNA downstream 275657 12099805 ~ 12122603 (+) True tnfsf10l
XM_034303321.1 mRNA downstream 374194 12198342 ~ 12206875 (+) True tifa
XM_034303320.1 mRNA downstream 375221 12199369 ~ 12206875 (+) False tifa
XM_026936972.2 mRNA downstream 375303 12199451 ~ 12206875 (+) False tifa
XR_003403980.2 other upstream 121471 11644902 ~ 11697295 (+) False si:ch211-200p22.4
TU73719 other upstream 1155359 10657357 ~ 10663407 (+) True c4h4orf48
trnak-cuu_21 other upstream 1253042 10565653 ~ 10565724 (+) True trnak-cuu_21
trnak-cuu_20 other upstream 1287238 10531456 ~ 10531528 (+) True trnak-cuu_20
trnan-guu_13 other upstream 1287722 10530971 ~ 10531044 (+) True trnan-guu_13
TU74787 other downstream 468366 12292514 ~ 12295123 (+) False si:dkey-112a7.4
TU75687 other downstream 1594229 13418377 ~ 13418696 (+) True G63903
TU75730 other downstream 1646621 13470769 ~ 13475037 (+) False LOC113539889
XR_003404009.2 other downstream 1734475 13558623 ~ 13562266 (+) True cited1
XR_004577999.1 other downstream 1881428 13705576 ~ 13719454 (+) False gc2

Expression Profile