RNA id: XM_026936211.2


Basic Information

Item Value
RNA id XM_026936211.2
length 1913
RNA type mRNA
GC content 0.47
exon number 9
gene id LOC113540033
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16498973 ~ 16504549 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTTTAGATCCAGAGCTGGTTTATAGGACTATAAGAGCTAGTGTCACTACCACAGTGCCTTCTGGTATAAGTGGCAGGATTTGGACCCACGGAGGACCTGTTAGAAGAGACCTATCCACTGTCTTTATCGAATTCACCTGAGACACCATGAGTACAGAGGCCGATATGAAGGAGGTGGAGCTGAATGAGATGGAGCAGGAGAAGCAGTCGATGAACACAGACACGGAGAAGAATGGCTGTGTGAAAGTGAAGGTTCCAGAGGAGAAAGAGGTCAAATTCACCGGCCTGACTAAAGAAGAGCTGATGAGAGTAGCAGGCACCACAGGATGGGTGCGGATTCGCTGGGTCTTGTTGGTTCTGTTCTGGCTCGGCTGGGTTGGAATGCTGGCCGGGGCAGTGGTGATCATTGTTCAGGCTCCCCGGTGTAAACCTGTTCCTGACATGCACTGGTGGAATGAGGGACCGCTCTACCAGATATCTGATGTGAACAGCTACTCTGAAGGCATTAAAGGAATAGAAAACAACCTGGACAGTCTGAACCAGCTGAAGGTGAAAGGGTTGATCCTGGGCCCAATACACACTGTTCAGGAGGACCAAATGAGTACATTGAATTTGAAAGACATAGACCCTGTGCTGGGCACTCAGAAAGACCTGGACAGCCTGCTAGAAAGAGCCCACAAGAAGGgtATCTCTATAGTGCTGAATCTGACACCCAACTATAAGGGAGCTGCAGCTTGGTTCAACAACGTTGCTGCTGCTCTTGAAAAATTTCAGGATGCATGTGCCTACTGGCTACAACAAGGAGTGGATGGCTTTCTCATTTCTGATATGAGCCAGGTTGTCAATACTGCTACCTGGAAGTCCATCCAGAATGTTATTCATCCCAACACCACAGAAGGGACTAAAAAAAGTGCTCTGATAGGTTCATTCACCAAGCTGCCTGCAGACAATGTCTCTCTGCTGCTGGAGAACACTGGAGTTGATCTGTTGCTAACCAGACTGCAAAGTTTTAATCTGTCTGGGGTACAGGAGGCTGAGGACATAATGAAGCTCTATCCCAGCCACTCTAGCCTTGCCTGGAGCCTGAGTAAACACACTTCAGATTTGCCCACACGCCTCTACCATATGCTGCTCTTCACCCTGCCTGGCACCCCAGTGTTCAACAGAGGGGATGAGGTTGGACTGATAGAGGGCGAATCCCTTACTGGAATTTGGGACTTGGAAAGTCCAGCTGAGGAGAACAATGAAACAGCAAAGactGTAAGAGCAGAACGCAGTGCAGTGCGAAGCTTCTTTAAGGCTCTCAGTGACCTTAGAGGTAAAGAAAGAGCTCTGCTGCATGGTGAATATGCCTCTCTACACAGCTCCATCTCCTCGTTTGCATTCCTCCGCCTGTGGGATCAGAGTGAACGCTTCATCACTGCCTTAAACTGGGGCAATTCCCCTGTCACAATGACGCTGACCAACAGCGACCTGCCTGCTGAGGCCAGGGTCCGTCTCAGTACAGATGCAGAGAAGCTAGCTGTGGACCGCATGGTGCCTTTGGAGAAACTGCAGCTAGAGGCCAAACAAGCTGTTTTATTGTCCTATCCTTATACAGGATAggtacattaataaaaatacacatgtaATAACACAAGGCTCCTTTTCAAAATAGAAAGCTAATGTTAAACAAGCTCTGTTTGTTCTCATCGCTATGCTCATTTTAGTTTTGGAATATGGAAGAATGCTGTGTCTGTTTTAGAAATTAGTTTCCTACAAAGTTTTATCTGTATTCTAATACTAACATATAAGGGCAAAATGGGTGCACTGAAACAGTATTATTACAGCTGGATAGGACATTCTAGCTTTGTGTGTATGGGCCaccatgaaaaaataaatgcaaaaaaaaaaataaacattgaatATGATG

Function

GO:

id name namespace
GO:0060142 regulation of syncytium formation by plasma membrane fusion biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77566 lncRNA downstream 47081 16451677 ~ 16451892 (-) True G65508
TU77541 lncRNA downstream 67455 16431136 ~ 16431518 (-) True G65494
TU77540 lncRNA downstream 69615 16429143 ~ 16429358 (-) True G65493
TU77538 lncRNA downstream 71566 16427201 ~ 16427407 (-) True G65491
TU77517 lncRNA downstream 125826 16369532 ~ 16373147 (-) True G65472
TU77696 lncRNA upstream 88079 16592628 ~ 16594451 (-) False leap2
TU77804 lncRNA upstream 101458 16606007 ~ 16606592 (-) True G65700
TU77819 lncRNA upstream 170711 16675260 ~ 16676349 (-) False G65715
TU77820 lncRNA upstream 170711 16675260 ~ 16684591 (-) True G65715
XR_004577996.1 lncRNA upstream 224142 16728691 ~ 16735897 (-) True LOC117597072
XM_026935950.2 mRNA downstream 3503 16482264 ~ 16495470 (-) False si:dkey-19b23.10
XM_026935948.2 mRNA downstream 3504 16482264 ~ 16495469 (-) True si:dkey-19b23.10
XM_026935949.2 mRNA downstream 11231 16482264 ~ 16487742 (-) False si:dkey-19b23.10
XM_026936161.2 mRNA downstream 28842 16465405 ~ 16470131 (-) False si:dkey-19b23.7
XM_026936160.2 mRNA downstream 28842 16465405 ~ 16470131 (-) True si:dkey-19b23.7
XM_026936213.2 mRNA upstream 2424 16506973 ~ 16514848 (-) True zgc:103586
XM_026936214.2 mRNA upstream 2424 16506973 ~ 16509694 (-) False zgc:103586
XM_026936212.2 mRNA upstream 2424 16506973 ~ 16509563 (-) False zgc:103586
XM_034303398.1 mRNA upstream 24257 16528806 ~ 16535886 (-) True LOC117596996
XM_034303399.1 mRNA upstream 28228 16532777 ~ 16535886 (-) False LOC117596996
TU77497 other downstream 75809 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 427281 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 507088 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 594618 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 623075 15875827 ~ 15875898 (-) True trnap-ugg_2
TU77801 other upstream 99559 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 896045 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 934944 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 1089900 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 1266601 17771150 ~ 17771231 (-) True trnas-uga

Expression Profile