RNA id: XM_026936213.2


Basic Information

Item Value
RNA id XM_026936213.2
length 3029
RNA type mRNA
GC content 0.40
exon number 8
gene id zgc:103586
representative True

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 16506973 ~ 16514848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTGTCAAAGTGTTTACGCAGGAtatagctgctgctgctgcaaaaaaaaaagattaacttCCAGGTTTTACACAGTAAAACTACATAAGTTCTTGGTTGTCATATTACCTTCTTTCAGAAAAGTTTTATTATCTTTCATACTGGACATTAGCTTTCAGTGAACAATCACTGAAGATGGAAACAGAAGAAAGAACCTCTGTTTGTAAATCATTTACTGTGCTGCTGAATCTAATTGCTTGGATGCTTCTGGTAACAGCTGTGGGATTAGGAGCCATTCATTTCAGTGAATGCCCCATTCAGCCCTACATTCCTATATATCTGATTATTATTGGTGGGTGTGGGATCATTTTATTGATGTTGGCCTACTGGACGAACACGCTGCATGAAGGATTCTGGTGTCAGATCTGCATTCTAAGTATTATATGCATTAGTGTTTTCAGCATCGCCTGGTTTCTTACAGgAACAGTCTGGATTTACTCCATATATCCTCCAAGCTATAACTCCACAGCTGTGGGACACTACTGCCAGAGGACTCTTTACCTGTTTGCCTTTTGGTTCAATATCCTgggctttttgtgtgtgtttttttttgttccttgcTGTATATGTTATGTTTTGTACGAGTGTATTAGAACTATATTTGGATAATATCATGGTTTTGCTAGCATttaaattttgtaatatttgtccAAACTTTTCTAACTTTTGTATTACTGACACGTCCACtatctccattttgttttatatataattgtcTTCAGGTTCTAGAATATTACAACTCTCCCAGCTGAGACACCGCCCATTGGTCCAATAGGCGCGCTTAACAATGACGTAATCCGTGTCCAGCCAATGGCGAGTAGGAATCGAACATCACCGTTTAAGAGCTTACACAAACATGCGAGTGTTGACTTTAGGAAGTTATGCAGGGCTCTTTTAGGTCTTTACAAGTTCTCATATATAACGCGTCCCTGCTCTTTTAGACGCCATGGCTGTTGCAGAACTGGTGGCAAAATGCTTGCAGGCACGAGACATGGCTTATTGTCCCTATAGCCAGTTCCCGGTTGGTGCTGCTATTTTGACATCAGGAGGTGCCATAATCACAGGTTGCAACGTAGAGAATGCTTCTTACGGCCTTACAGTTTGTGCAGAGCGAACAGCCATACAGAGAGCTGTAGCTGAGGGCCACAGAAGTTTTACAGCTATAGCAGTCACATGTGATATTAAAGATAGTTTTGTGGGACCCTGTGGGGCCTGTCGACAGGTATTAATGGAGtTTGGTACAGAGTGGGACATTTATCTGACAAAGCCTGATGGGGCCTATAAGAAAACAAGTCTGAGAGAGCTGCTGCCTTTAGCATTCAGCCCAGCTCACCTGGCAGAAGATGGCAATTAAAACAATAGCTTTTTAGGACAGTCTGTTTTGTTCTTCTTACTTTGAATTAGAAGTGTACATTGGGACTGCTAAAAAGTGGCAGGATCAGGTGGTTTTTTTACTCCCATTCAGGTGGGAGTTGGTGGTCAGATCTGAACCTCGCAGGACGAAGAAAGGCCAGGGAGTGTTCTGGATGCAGCAGATTGTTTCTGTGGCACTGTGCAGTGCACTTGTGCAATGCATTACTATCTTCCGGAAATGCATTATTCTGGTTAAGGTCACTGTTAAAtgactaatttatttatatttgggGGAATAAACTAAGATCATTAGAAAATATCGagggcaggtacaaacaaaaataagtgtgtaaaaaataacTGTGGAACCAGAAAGGATTGATCAAGCTTTCTGAAGTAGTGAGCaagattggggaaaaaagagtaCTGCACAACCTTTAACTCTACATCCCTACTCAAACCTTTTGTGATGTTGCAAATCAAACacttgcatttttgtttttttggggtcATGTAGGACGACTTCTGATATTCCATACCCTCAATTTTTCATATCCTCAGGTATCATCATTCTCAAGTTAGAGctataaaaatgttcatttagtAATAACAATCAGCCCTTAAATTAACCAATAAGcaattaacttttttaaaaaaaatttattttaagttatGAAATCTAGCCTTTGCTGATACTGAATCACGAATGTAGCTAAAGATGTACCACAAGAGGGCGCAACAAGAACAAGCGGTGCAGAATTTATGTATTGTTAGAGCACCACTGAACTAAAATCTTCAGAGAGCATGTCTCAAATTTAAATCAGCTCTTTCTTCCTCAAtatagatattttaaaatacatatttatttatatacataaatatttaacagcTTTGTAGTCATTTGAGTGTTCATCATCTTTCAGAGAACCTTTTCCCCTTAATTTGTGAAACTGAAAAGAAAGTGCTCAGTGTAGAGGAAGGAAAGTGTGGGATTTATCCATGTGCCCCTGGTGCCCCACGGGGCTGTTTGAAATTCTCCTCTGCGACATTGAGGGGACAACATTCAGTTCTGTCACCCGGGAAAAACACTCTGACATTGTTCTCtgtgagaggcagagagggagagagcgggGAGGGGTAAAAGCGTGAGAGAGAATGAacgagaggggaaaaaaacaagtaaaaggGAAAGACTACAAGCTAGACTTTGTTTCCATGAGGTACTACTGAAAGCAAGAAAATTACACTCATCTCAAAGCTAGAAGTGAGCAGTACTGAAGAGCTGATAAGATATAAGACATGAAGagataaaaaggaaaagacaaaAGGTGACAATAAAACGGCTGACAAGGCAGTGTTCACATTGGTGAAATAACATGGCTGAGCATTTCAGAAAGGGCAGAGCAGCTGAGAGCAGATGATAAGTAATAAGCAGcgagagtgttttttttcttggcctAAGCAAATACAGGACACAGCAGGACCTACTCGTCTcttatgtacacacactcacacagtttGTTAACACTGTTTTACTAGTCTTTGTTGTTTACACACattctgtatttaaatacaGTAGTTCAATGATAAGTGCTCATGTGCTACACACTTATAAATTGAGACATGTATCATACAA

Function

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU77566 lncRNA downstream 55081 16451677 ~ 16451892 (-) True G65508
TU77541 lncRNA downstream 75455 16431136 ~ 16431518 (-) True G65494
TU77540 lncRNA downstream 77615 16429143 ~ 16429358 (-) True G65493
TU77538 lncRNA downstream 79566 16427201 ~ 16427407 (-) True G65491
TU77517 lncRNA downstream 133826 16369532 ~ 16373147 (-) True G65472
TU77696 lncRNA upstream 77780 16592628 ~ 16594451 (-) False leap2
TU77804 lncRNA upstream 91159 16606007 ~ 16606592 (-) True G65700
TU77819 lncRNA upstream 160412 16675260 ~ 16676349 (-) False G65715
TU77820 lncRNA upstream 160412 16675260 ~ 16684591 (-) True G65715
XR_004577996.1 lncRNA upstream 213843 16728691 ~ 16735897 (-) True LOC117597072
XM_026936211.2 mRNA downstream 2424 16498973 ~ 16504549 (-) True LOC113540033
XM_026935950.2 mRNA downstream 11503 16482264 ~ 16495470 (-) False si:dkey-19b23.10
XM_026935948.2 mRNA downstream 11504 16482264 ~ 16495469 (-) True si:dkey-19b23.10
XM_026935949.2 mRNA downstream 19231 16482264 ~ 16487742 (-) False si:dkey-19b23.10
XM_026936161.2 mRNA downstream 36842 16465405 ~ 16470131 (-) False si:dkey-19b23.7
XM_034303398.1 mRNA upstream 13958 16528806 ~ 16535886 (-) True LOC117596996
XM_034303399.1 mRNA upstream 17929 16532777 ~ 16535886 (-) False LOC117596996
XM_026936098.2 mRNA upstream 37540 16552388 ~ 16564137 (-) True LOC113539955
XM_034303424.1 mRNA upstream 37540 16552388 ~ 16563741 (-) False LOC113539955
XM_026936842.2 mRNA upstream 51216 16566064 ~ 16584533 (-) True phka1a
TU77497 other downstream 83809 16419310 ~ 16423164 (-) True tnfsf12
XR_003404041.2 other downstream 435281 16055022 ~ 16071692 (-) False acox3
XR_004577994.1 other downstream 515088 15973579 ~ 15991885 (-) False smim20
XR_004578098.1 other downstream 602618 15879471 ~ 15904355 (-) False tbc1d19
trnap-ugg_2 other downstream 631075 15875827 ~ 15875898 (-) True trnap-ugg_2
TU77801 other upstream 89260 16604108 ~ 16605717 (-) False bmp15
TU78232 other upstream 885746 17400594 ~ 17402464 (-) True G66053
TU78241 other upstream 924645 17439493 ~ 17444174 (-) False rnaseka
TU78578 other upstream 1079601 17594449 ~ 17634868 (-) True G66281
trnas-uga other upstream 1256302 17771150 ~ 17771231 (-) True trnas-uga

Expression Profile